DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdfr and pth2rb

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:XP_017208978.2 Gene:pth2rb / 564876 ZFINID:ZDB-GENE-050208-334 Length:600 Species:Danio rerio


Alignment Length:534 Identity:146/534 - (27%)
Similarity:228/534 - (42%) Gaps:84/534 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 CNWTWDTLLCWPPTPAGVLARMNCPGGFHGVDTRKFAIRKCELDGRWGSRPNATEVNPPGWTDYG 280
            |:..||.|:|||....|.:.::.||...:..:...||.|:|..:|.|.|..|.|      |.:|.
Zfish    59 CSPGWDGLVCWPQGSPGTVTKVPCPSYVYDFNHNGFAYRQCSSNGSWVSVENRT------WVNYS 117

  Fly   281 PCYK---PEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRT 342
            .|.:   |.|     :.|.:||      ..|...:..||..:|..:|:|::.|...||.|...|.
Zfish   118 DCLRFLAPGI-----EKGKRDF------FERLHIMYTVGYAVSFSSLLVAIFIIGYFRRLHCTRN 171

  Fly   343 KIHKNLFVAMVLQVI--------IRLTLYLDQFRRGNKEAATNTSLSVIENTPYL-CEASYVLLE 398
            .||.:|||:.:|:.|        :.....|.::.....:..:..|:|.::.|.|. |:.:.:...
Zfish   172 YIHMHLFVSFMLRAISIFVKDRVVYANGVLQEYDTMLMDNISTVSISPLDKTQYFGCKITVLFFI 236

  Fly   399 YARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTVMYMDTSLGEC 463
            |.....:.|:.:||||||:::.:|.|..|..|..|:.:||.||.|..:.||.......|   ..|
Zfish   237 YFLATNYYWILVEGLYLHSLIFMAFFSDSKYLWGFTLIGWGVPALFVSTWAVVRATLAD---ARC 298

  Fly   464 LWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQASDIE---QTRKAVRAAIVLLP 525
             |..:.....||.:.|.|..|.|||...|||:|||..|:|::.|...:   |.||..::.:||:.
Zfish   299 -WELSAGNIKWIYQVPILTAIGLNFILFVNIVRVLATKIRETNAGRYDTRKQYRKLAKSTLVLVL 362

  Fly   526 LLGITNLLHQLAP-LKTATNFAVWSYGTHFLTSFQGFFIALIYCFLNGEVRAVLLKS-LATQLSV 588
            :.|:..::....| ..|...:.:..|...|..||||||:::||||.||||:|.:.|: |...|:.
Zfish   363 VFGVHYIVFVGMPHTFTGLGWELRMYCELFFNSFQGFFVSIIYCFCNGEVQAEIRKTWLRWTLAF 427

  Fly   589 RGHPEW-APKRASMY--------SGAYNTAPDTDAVQPAGDPSATGKRISPPNKRLNGRKPSSAS 644
                :| .|...:.|        |||.|.:..|...:.:   :....||.....|     ||..|
Zfish   428 ----DWKGPVVLANYRYGSVLNNSGASNQSQLTSVTRSS---ALLTSRIYRCTSR-----PSVGS 480

  Fly   645 IV-----------MIHEPQQRQRLMPRLQNKAREKGKDRVEKTDAEAEPDPTISHIHSKEAGSAR 698
            :.           .:......:.|.|.:..:..|:.|.              |..|..||.....
Zfish   481 LTHTSHIHTSLPGYVFSNSDIESLPPSIPEELEEEAKH--------------IDDITLKENAKIA 531

  Fly   699 SRTRGSKWIMGICF 712
            |.....:..:||||
Zfish   532 SAVTVRQEALGICF 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 19/55 (35%)
7tm_4 306..563 CDD:304433 79/269 (29%)
pth2rbXP_017208978.2 HRM 57..119 CDD:308439 21/65 (32%)
7tmB1_PTHR 135..422 CDD:320393 90/290 (31%)
TM helix 1 137..162 CDD:320393 7/24 (29%)
TM helix 2 171..193 CDD:320393 7/21 (33%)
TM helix 3 229..256 CDD:320393 8/26 (31%)
TM helix 4 268..288 CDD:320393 8/19 (42%)
TM helix 5 303..332 CDD:320393 12/28 (43%)
TM helix 6 349..376 CDD:320393 6/26 (23%)
TM helix 7 384..409 CDD:320393 12/24 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D290902at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45620
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.020

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