DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdfr and gcgra

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:XP_009298002.1 Gene:gcgra / 562973 ZFINID:ZDB-GENE-050516-1 Length:520 Species:Danio rerio


Alignment Length:483 Identity:132/483 - (27%)
Similarity:211/483 - (43%) Gaps:87/483 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 PQTGLYCNWTWDTLLCWPPTPAGVLARMNCPGGF-------HGVDTRKFAIRKCELDGRWGSRPN 267
            |.||:.||.|:|...|||.........:.||...       ||:     ...:|:.||::..:.:
Zfish    48 PMTGVVCNRTFDRYACWPDALPNTTVSVACPWYLPWHKEVRHGL-----VHVECDADGQYSKQKD 107

  Fly   268 ATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFC 332
            |:|           |           :...:...|..|.|:.||:..||..|||.||:::|.|..
Zfish   108 ASE-----------C-----------LSRDNIQHYGRILRQFRTMYTVGYSLSLGALVLALSILV 150

  Fly   333 TFRSLRNNRTKIHKNLFVAMVLQ---VIIR--LTLYLDQFRRGNKEAATNTSLSV---IEN-TPY 388
            .||.|...|..||.|||.:.:|:   ::|:  |:...|.|..|..   ..|.|.|   ::| |..
Zfish   151 AFRKLHCMRNNIHMNLFASFILRASSILIKDALSERPDTFPVGQD---ITTELEVEWLVKNETAV 212

  Fly   389 LCEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTV 453
            .|..:.|:::|:..|...|:.:||:|||:::.|.|......|..:..:||..|::....|.....
Zfish   213 GCRVAVVMMQYSILANSYWLLVEGIYLHSLLVVTVLTERNYLSIYLSIGWGAPLIFVLPWVIVKY 277

  Fly   454 MYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQASDIEQTRKAVR 518
            :|.:.   ||....|...|:||:..|.|..:|:||...::||::||.|||..|....:...:..:
Zfish   278 LYENE---ECWEQNNHMEYWWIIRSPILLAVLINFFIFIHIIKILVSKLRAHQMRYSDYKFRLAK 339

  Fly   519 AAIVLLPLLGITNLL----------HQLAPLKTATNFAVWSYGTHFLTSFQGFFIALIYCFLNGE 573
            :.:.|:|||||.::|          |...||:....|.     ..|..||||..:|::|||:|.|
Zfish   340 STLTLIPLLGIHSVLFSFVTDESTSHGALPLRLTKLFI-----DLFFNSFQGLLVAILYCFVNKE 399

  Fly   574 VRAVLLKSLATQLSVRGHPEWAPKR--ASMYSGAYNTAPDTDAVQPAGDPSATGKRISPPNKRLN 636
            |::.:||...         .|...|  ...|...|:.:..   :|.:|     ...:.|.|.   
Zfish   400 VQSEILKKWR---------RWKLGRDIEEEYRHTYSQSLQ---IQKSG-----SIMVHPTNL--- 444

  Fly   637 GRKPSSASIV-MIHEPQQRQRLMPRLQN 663
            .|.|..|:.. .:..|:::|.|:...||
Zfish   445 PRLPDIATTTSRLGSPEEKQMLVSSSQN 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 17/65 (26%)
7tm_4 306..563 CDD:304433 85/275 (31%)
gcgraXP_009298002.1 HRM 51..113 CDD:308439 18/88 (20%)
7tm_GPCRs 124..410 CDD:333717 94/305 (31%)
TM helix 1 127..151 CDD:320095 11/23 (48%)
TM helix 2 160..181 CDD:320095 7/20 (35%)
TM helix 3 215..237 CDD:320095 5/21 (24%)
TM helix 4 256..272 CDD:320095 3/15 (20%)
TM helix 5 290..313 CDD:320095 8/22 (36%)
TM helix 6 335..360 CDD:320095 7/24 (29%)
TM helix 7 372..397 CDD:320095 10/29 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D290902at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45620
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.020

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