DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdfr and calcrla

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_001004010.1 Gene:calcrla / 445508 ZFINID:ZDB-GENE-040822-26 Length:470 Species:Danio rerio


Alignment Length:467 Identity:140/467 - (29%)
Similarity:212/467 - (45%) Gaps:72/467 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 LTLASAAATNFENCSALFVNYTLPQTGLYCNWTWDTLLCWPPTPAGVLARMNCPGGFHGVDTRKF 251
            :|........||....:..:.:..:.|..||.|||..|||..|.||:.:..:||..|...|..:.
Zfish    44 VTRNKIVTAQFECYQKIMKDNSQDRRGPVCNRTWDGWLCWDDTEAGITSEQHCPDYFQDFDPTEM 108

  Fly   252 AIRKCELDGRWGSRPNATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDFDAYIDIARRTRT----L 312
            ..:.|...|:|...|.:...    ||::..|                 :.:....|||..    |
Zfish   109 VTKICTESGQWFLHPESNRT----WTNFTRC-----------------NLHTTEGRRTAMNLFYL 152

  Fly   313 EIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQFRRGNKEAATN 377
            .::|..|||.:|.:||.||..|:||...|..:|||||.:.||..||.: ::|         .|..
Zfish   153 ALIGHGLSLTSLFISLGIFFHFKSLSCQRITLHKNLFFSFVLNSIITI-IWL---------TAVA 207

  Fly   378 TSLSVIENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPI 442
            .:..:::..|..|:.|..:..|.....:.||..||:|||.::.||||.....|.::..|||..|:
Zfish   208 NNQELVQQNPISCKISQFIHLYIFGCNYFWMLCEGIYLHTLIVVAVFAEKQHLMWYYLLGWGFPL 272

  Fly   443 LMTTVWARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQA 507
            :..|:.|.....|.:.:   | |..:.|...:|:.||..|.:|:|..||:||:|||:.||:.:..
Zfish   273 IPATIHAVARSYYYNDN---C-WISSNTSLLYIIHGPICAAMLVNLFFLLNIVRVLITKLKVTHQ 333

  Fly   508 SDIEQTRKAVRAAIVLLPLLGITNLLHQLAPLKTA--TNFAVWSYGTHFLTSFQGFFIALIYCFL 570
            :......|||||.::|:|||||.   :.|.|.|.:  .:..::.|..|.|..:||..:|.|:||.
Zfish   334 AKSSLYMKAVRATLILVPLLGIQ---YVLLPYKPSGRVSAEIYDYIMHILMHYQGLLVATIFCFF 395

  Fly   571 NGEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAGDPSATGKRISP----- 630
            ||||:|||          |.|  |...|....|    |...:||::.|   |.|...|:.     
Zfish   396 NGEVQAVL----------RRH--WNQYRIQFGS----TITQSDALRSA---SYTASSITEVQGCY 441

  Fly   631 ----PNKRLNGR 638
                ..:.|||:
Zfish   442 SIDGHTEHLNGK 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 20/58 (34%)
7tm_4 306..563 CDD:304433 88/262 (34%)
calcrlaNP_001004010.1 HRM 70..136 CDD:280888 23/86 (27%)
7tm_2 146..388 CDD:278432 85/258 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001436
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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