DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdfr and CG15556

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_001247379.1 Gene:CG15556 / 43681 FlyBaseID:FBgn0039821 Length:755 Species:Drosophila melanogaster


Alignment Length:573 Identity:121/573 - (21%)
Similarity:197/573 - (34%) Gaps:200/573 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 SGGRVRHADSLHIYYAVDGK--MTLLSNILDCGGCISAQRFTRLLRQSGS-------SGPSPSAP 105
            |||.:.|.:.||:   .|.:  :..:.| |:....|..:.:|:|.|:..|       :..|....
  Fly   292 SGGNMSHFEMLHL---SDNEEDIRAMKN-LESAVFIPEKLWTQLKRKGASYLVFKVYTRDSLFVE 352

  Fly   106 TAGTFESKSMLEPTSSHSLATGRVPLLHDFDASTTESPGTYVLDGVARVAQLALEPTVMDALPDS 170
            |    |.:....|||:....|  :|.|:|     |:.||                          
  Fly   353 T----EEEIKRRPTSNVISIT--IPGLND-----TKLPG-------------------------- 380

  Fly   171 DTEQVLGNLNSSAPWNLTLASAAATNFE-NCSALFVNYTLPQTGLYCNWTWDTLLCWPPTPAGVL 234
                       ..|:.|..|.|..|.|| .|.               .|.::|.|....:.:|  
  Fly   381 -----------KLPFFLRNAKANETQFEGGCG---------------YWNYETWLSDGISTSG-- 417

  Fly   235 ARMNCPGGFHGVDTRKFAIRKCELDGRWGSRPNATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDF 299
                  ||  .::.....:..|..|                          .:.:....:|....
  Fly   418 ------GG--SLEASSHPVILCHAD--------------------------HLTQFTFLLGVSKM 448

  Fly   300 DAYIDIARRTRTLEI---VGLCLSLFALI---VSLLIFCTFRSLRNNRTKIHKNLFVAMVLQVII 358
            .|.:|......:|::   |||.|||..|:   ::..:|.:||:|.:  |||..||..|:.||::.
  Fly   449 QAGLDTNEDDHSLDVITNVGLTLSLLGLLMIFITAAVFKSFRTLAS--TKILLNLCAALGLQLLF 511

  Fly   359 RLTL----YLDQFRRGNKEAATNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMV 419
            .|.|    .|:|..:...|.               |.....:::|....:|.||||.| :|....
  Fly   512 FLILSQSHLLEQLEQSESER---------------CTLVGAVMQYLLLVVFSWMFIIG-FLQYQR 560

  Fly   420 TVAVFQGSFPLKFF---SRLGWCVPILMTTVWARCTVMYMDTSLGECLWNY---NLTPYYWIL-- 476
            .|.|...:.|..:.   :...|.:|::.|.:     |::::..      :|   |.:..|.||  
  Fly   561 YVRVIGVNHPRHYILMSAVAAWTLPLIPTLL-----VVFLEPG------SYRPNNSSMDYPILCY 614

  Fly   477 ---EGPRLAVIL-LNFCFLVNIIRVLVMKLRQSQASDI---EQTRKAVRAAIVLLPLLGITNLLH 534
               .|..|.||| :....:.|.|  ||..:..|..:.:   :...|.:...::|..|||||    
  Fly   615 PSGYGLSLGVILPIGLITVANAI--LVGYISWSVYTALFKRDLIFKQLGLFVLLFFLLGIT---- 673

  Fly   535 QLAPLKTATNFAVWSYG--THF-----------LT-SFQGFFIALIYCFLNGE 573
                         |.:|  |:|           || :.|||.:.|.:...|.|
  Fly   674 -------------WIFGLCTYFDFGRIFAYLFCLTATLQGFVLFLYFIVFNKE 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 8/58 (14%)
7tm_4 306..563 CDD:304433 72/295 (24%)
CG15556NP_001247379.1 7tm_4 481..703 CDD:304433 64/269 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462184
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.