DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdfr and pth1r

DIOPT Version :10

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_571432.1 Gene:pth1r / 30629 ZFINID:ZDB-GENE-991123-8 Length:536 Species:Danio rerio


Alignment Length:474 Identity:138/474 - (29%)
Similarity:214/474 - (45%) Gaps:76/474 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 LPDSD-----TEQVLGNLNSSAPWNLTLASAAATNFENCSALFVNYTLPQTGLYCNWTWDTLLCW 226
            |.|:|     .||:....|:.......:.|...|:..:|        ||:        ||.:|||
Zfish    25 LVDADDVLTKEEQIYLLFNAKRKCERAIKSKHKTSEGSC--------LPE--------WDGILCW 73

  Fly   227 PPTPAGVLARMNCPGGFHGVDTRKFAIRKCELDGRW--GSRPNATEVNPPGWTDYGPCYK--PEI 287
            |....|.:...:||...:..:.:..|.|:|:|:|.|  .|..|.|      |.:|..|.|  |  
Zfish    74 PEGVPGKMVSTSCPEYIYDFNHKGHAYRRCDLNGTWELASHNNKT------WANYSECAKFFP-- 130

  Fly   288 IRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAM 352
             ...|....:.||       |...:..||..:||.:|:|:.:|...||.|...|..||.:||::.
Zfish   131 -HYNQNQEREVFD-------RLYLIYTVGYSISLGSLMVATVILGYFRRLHCTRNYIHMHLFLSF 187

  Fly   353 VLQVII----RLTLY----LDQFRRGNKEAATN-TSLSVIENTPYL-CEASYVLLEYARTAMFMW 407
            :|:.|.    .:.||    |.:..|...|...: |.......|.:: |:.:..|..|.....:.|
Zfish   188 MLRAISIFVKDVVLYSGSALQEMERITVEDLKSITEAPPANKTQFIGCKVAVTLFLYFLATNYYW 252

  Fly   408 MFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTVMYMDTSLGECLWNYNLTPY 472
            :.:||||||:::.:..|.....|..|:.:||.||.:..|:||.......||   || |:.:....
Zfish   253 ILVEGLYLHSLIFMTFFSDRKYLWGFTLIGWGVPAMFVTIWASVRATLADT---EC-WDLSAGNL 313

  Fly   473 YWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQASDI---EQTRKAVRAAIVLLPLLGITNLLH 534
            .||::.|.|..|::||...:||||||..|||::.|...   :|.||.:::.:||:||.|:..::.
Zfish   314 KWIVQIPILTAIVVNFLLFLNIIRVLATKLRETNAGRCDTRQQYRKLLKSTLVLMPLFGVHYIVF 378

  Fly   535 QLAPLKTATNFAVWSYGTHF---LTSFQGFFIALIYCFLNGEVRAVLLK-----SLATQLSVRGH 591
            ...|. |..:..:|....|:   ..|.||||:|:||||.||||:|.:.|     :||....    
Zfish   379 MAMPY-TEVSGVLWQIQMHYEMLFNSVQGFFVAIIYCFCNGEVQAEIKKAWNRRTLALDFK---- 438

  Fly   592 PEWAPKRASMYSGAYNTAP 610
                 ::|...|..|:..|
Zfish   439 -----RKARSGSNTYSYGP 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:397086 18/60 (30%)
7tmB1_PDFR 306..584 CDD:320389 96/298 (32%)
TM helix 1 308..333 CDD:320389 8/24 (33%)
TM helix 2 342..364 CDD:320389 8/29 (28%)
TM helix 3 391..418 CDD:320389 9/26 (35%)
TM helix 4 430..450 CDD:320389 8/19 (42%)
TM helix 5 469..498 CDD:320389 11/28 (39%)
TM helix 6 512..539 CDD:320389 8/26 (31%)
TM helix 7 546..571 CDD:320389 12/27 (44%)
pth1rNP_571432.1 HRM 60..125 CDD:397086 23/86 (27%)
7tmB1_PTH1R 141..430 CDD:320650 97/300 (32%)
TM helix 1 143..168 CDD:320650 8/24 (33%)
TM helix 2 177..199 CDD:320650 6/21 (29%)
TM helix 3 236..263 CDD:320650 9/26 (35%)
TM helix 4 275..295 CDD:320650 8/19 (42%)
TM helix 5 310..339 CDD:320650 11/28 (39%)
TM helix 6 356..383 CDD:320650 8/26 (31%)
TM helix 7 392..417 CDD:320650 11/24 (46%)

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