DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdfr and Remo

DIOPT Version :10

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_572870.2 Gene:Remo / 2768909 FlyBaseID:FBgn0030466 Length:1797 Species:Drosophila melanogaster


Alignment Length:521 Identity:98/521 - (18%)
Similarity:146/521 - (28%) Gaps:213/521 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EMERDQFSIAANACMSMGPMLISKDKAPCSGGRVRHADSLHIYYAVDGKMTLLSNILDCGG---- 81
            |:::|.|          |..|...:|...:|..:.     |||.....:|..| .:||..|    
  Fly   121 ELDKDTF----------GDSLAHLEKLKLAGNAIS-----HIYEGTFDQMPKL-KLLDLSGNPLA 169

  Fly    82 ---------CISAQRFTRLLRQSGSSGPSPSAPTAGTFESKSMLEPTSSHSLATGRVPLLHDFDA 137
                     ..|:.|..||       .|.|...:.|.|....:      ..|..|:     ||..
  Fly   170 CDCGLIWLIAWSSSREVRL-------QPPPKCESPGNFRGMPL------KKLRVGK-----DFHC 216

  Fly   138 STTESPGTYVLDGVARVAQLALE-----------------PTVMDALPD---------------- 169
            .|...|   :|:.:....|:|.|                 |...:.||.                
  Fly   217 ETLLQP---LLELIPSQNQVAFEGDELQLKCHAPRVAIGVPRESEDLPTKAYVFWGWSEKIRAKN 278

  Fly   170 -------SDTEQVLGNL------------------------NSSAPWNLTLASAAATNFENCSAL 203
                   .|..:|.|::                        |.:..|:.||.|..|    |.|..
  Fly   279 STEDIIYQDPTKVFGDVNLETRHSTDSGILQSILRIASLTQNHTGMWDCTLRSQQA----NLSQA 339

  Fly   204 FVNYTLPQTGLYCN----WTWDTLLCWPPTPAGVLARMNCPGGFHGVDTRKFAIRKCELDGRWGS 264
            .|.:.:.:..|||.    .|......||.|..|......|..........:.|..:|...|.|  
  Fly   340 IVLHVVAKGTLYCEARVVHTNKGTYHWPRTMRGETVLQECVEEPSDATQARRASHECGPSGEW-- 402

  Fly   265 RPNATEVNPPGWTDYGPC-YKPEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSL 328
                  :|    .|...| |..|..|:::|....:    :.:.:....|||.             
  Fly   403 ------LN----LDTESCVYVSETTRILEQFAKVN----LTLTKGQNALEIA------------- 440

  Fly   329 LIFCTFRSLRN---NRTKIHKNLFVAMVLQVIIR-LTLYLDQ----------------------- 366
                  |.|.|   .:|:::: :...|.|:.|.| |..||||                       
  Fly   441 ------RRLHNFTQAQTQLNR-IRDPMDLEYIARTLVKYLDQLEQPQQQQEISHLLMDIVSQLLN 498

  Fly   367 -----FRRGNKEAATNTSLSVIENTPYLCEASYVLLEYART-------AMFMW---------MFI 410
                 ||....|..|...|.      ::.|:|.:.|..|.|       .|..|         :|:
  Fly   499 LPAHLFRAAQSEQGTGQRLL------HVVESSAMRLALASTQAEPLPAEMIPWRGSLAQQRNLFV 557

  Fly   411 E 411
            |
  Fly   558 E 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:397086 13/62 (21%)
7tmB1_PDFR 306..584 CDD:320389 30/154 (19%)
TM helix 1 308..333 CDD:320389 3/24 (13%)
TM helix 2 342..364 CDD:320389 6/22 (27%)
TM helix 3 391..418 CDD:320389 9/37 (24%)
TM helix 4 430..450 CDD:320389
TM helix 5 469..498 CDD:320389
TM helix 6 512..539 CDD:320389
TM helix 7 546..571 CDD:320389
RemoNP_572870.2 PPP1R42 <56..148 CDD:455733 8/41 (20%)
LRR_8 107..168 CDD:404697 15/62 (24%)
leucine-rich repeat 109..133 CDD:275378 5/21 (24%)
leucine-rich repeat 134..157 CDD:275378 6/27 (22%)
PCC 139..>205 CDD:188093 17/78 (22%)
HRM <366..412 CDD:413313 12/57 (21%)
7tm_GPCRs 760..1101 CDD:475119
TM helix 1 763..787 CDD:320387
TM helix 2 799..820 CDD:320387
TM helix 3 830..852 CDD:320387
TM helix 4 887..903 CDD:320387
TM helix 5 921..944 CDD:320387
TM helix 6 1039..1061 CDD:320387
TM helix 7 1065..1090 CDD:320387
Blue background indicates that the domain is not in the aligned region.

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