DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdfr and Vipr1

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_035833.2 Gene:Vipr1 / 22354 MGIID:109272 Length:459 Species:Mus musculus


Alignment Length:495 Identity:132/495 - (26%)
Similarity:207/495 - (41%) Gaps:98/495 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 APWNLTLASA-----------AATNFENC---------------SALFVNYTLPQTGLYCNWTWD 221
            |.|...||.|           ||:..:.|               .|...|.|   ||  |:..||
Mouse     9 ARWLCVLAGALACALGPAGSRAASPHQECEYLQMIEKQRQQCLEEAQLENET---TG--CSKMWD 68

  Fly   222 TLLCWPPTPAGVLARMNCP------GGFHGVDTRKFAIRKCELDGRWGSRPNATEVNPPGWTDYG 280
            .|.|||.||.|.:..::||      ...||.:..:                |.||   .||:...
Mouse    69 NLTCWPTTPWGQVVVLDCPLIFQLFSPIHGYNISR----------------NCTE---EGWSQLE 114

  Fly   281 PCYKPEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIH 345
            |........|..:..|.|.....:.....:|...:|..|||.:|:|::.|...||.|...|..||
Mouse   115 PGPYHIACGLNDRASSMDEQQQTEFYDAVKTGYTIGYSLSLASLLVAMAILSLFRKLHCTRNYIH 179

  Fly   346 KNLFVAMVLQVIIRLTLYLDQFRRGNKEAATNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFI 410
            .:||::.:|:........:..|..|..:..:..|:|        |:|:.|..:|...|.|.|:.:
Mouse   180 MHLFMSFILRATAVFIKDMALFNNGETDHCSEASVS--------CKAAVVFFQYCVMANFFWLLV 236

  Fly   411 EGLYLHNMVTVAVFQGSFPLKFF---SRLGWCVPILMTTVWARCTVMYMDTSLGECLWNYNLTPY 472
            ||||||.::.|:.|.   ..|:|   ..:||.||.:...:|....:.:.|....:.:.|.:|   
Mouse   237 EGLYLHTLLAVSFFS---ERKYFWGYILIGWGVPSVFIMIWTIVRIHFEDFGCWDTIINSSL--- 295

  Fly   473 YWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQ--ASDIEQTRKAVRAAIVLLPLLGITNLLHQ 535
            :||::||.|..||:||...:.|||:||.|||...  .:|.....:..::.::|:||.|:..::..
Mouse   296 WWIIKGPILISILVNFILFICIIRILVQKLRPPDIGKNDSSPYSRLAKSTLLLIPLFGVHYVMFA 360

  Fly   536 LAP------LKTATNFAVWSYGTHFLTSFQGFFIALIYCFLNGEVRAVLLKSLATQLSVRGHPEW 594
            ..|      :|......|        .|||||.:|::||||||||:|.|.:.. .:..::|...|
Mouse   361 FFPDNFKAQVKMVFELVV--------GSFQGFVVAILYCFLNGEVQAELRRKW-RRWHLQGVLGW 416

  Fly   595 APKRASMYSGAYNTAPDTDAVQPAGDPSATGKRISPPNKR 634
            :.|....:.|:...:..|..        :...|:||..:|
Mouse   417 SSKSQHPWGGSNGVSCSTQV--------SMLTRVSPSARR 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 18/64 (28%)
7tm_4 306..563 CDD:304433 76/267 (28%)
Vipr1NP_035833.2 HormR 59..130 CDD:214468 24/94 (26%)
7tm_2 140..386 CDD:278432 76/267 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4564
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D290902at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45620
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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