DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdfr and Pth2r

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_644676.1 Gene:Pth2r / 213527 MGIID:2180917 Length:546 Species:Mus musculus


Alignment Length:557 Identity:140/557 - (25%)
Similarity:233/557 - (41%) Gaps:117/557 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 DSD-----TEQVLGNLNSSAPWNLTLASAAATNFENCSALFVNYTLPQTGLYCNWTWDTLLCWPP 228
            |||     .||::..:.:.....|.:.:.......||        .|:        ||.::|||.
Mouse    27 DSDGTITIEEQIVLVMKAKMQCELNITAQLQEGEGNC--------FPE--------WDGIICWPR 75

  Fly   229 TPAGVLARMNCPGGFHGVDTRKFAIRKCELDGRWGSRPNATEVNPPGWTDYGPCY-KPEIIRLMQ 292
            ...|.::.:.||...:..:.:..|.|.|..:|.|.|...:.:.    |.:|..|: :|:|     
Mouse    76 GTVGKMSAVPCPPYVYDFNHKGVAFRHCTPNGTWDSIHGSNKT----WANYSDCFLQPDI----- 131

  Fly   293 QMGSKDF--DAYIDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAMVLQ 355
            .:|.::|  ..||        |..||..:|..:|.|::||...||.|...|..||.:|||:.:|:
Mouse   132 NIGKQEFFESLYI--------LYTVGYSISFGSLAVAILIIGYFRRLHCTRNYIHLHLFVSFMLR 188

  Fly   356 VIIRLTLYLDQFRRGNKEAATNTSLSV--------------------IENTPYL-CEASYVLLEY 399
            .   :::::       |:......|.|                    ::.:.|: |:.:.|:..|
Mouse   189 A---MSIFV-------KDRVAQAHLGVEALQSLVMQGDLQNFIGGPSVDKSQYVGCKIAVVMFIY 243

  Fly   400 ARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTVMYMDTSLGECL 464
            .....:.|:.:|||||||::.|:.|..:..|..|..:||..|.:....||.......||   .| 
Mouse   244 FLATNYYWILVEGLYLHNLIFVSFFSDTKYLWGFISIGWGFPAVFVVAWAVARATLADT---RC- 304

  Fly   465 WNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQA--SDI-EQTRKAVRAAIVLLPL 526
            |..:... .||.:.|.||.|.|||...:|.:|||..|:.::.|  .|: :|.||..::.:||:.:
Mouse   305 WELSAGD-RWIYQAPILAAIGLNFILFLNTVRVLATKIWETNAVGHDMRKQYRKLAKSTLVLVLV 368

  Fly   527 LGITNLLHQLAPLKTATNFAVWSYGTH---FLTSFQGFFIALIYCFLNGEVRAVLLKSLATQ--L 586
            .|:..::....|...:..:  |....|   |..||||||::::||:.||||:|. :|.:.|:  |
Mouse   369 FGVHYIVFVCQPHSFSGLW--WEIRMHCELFFNSFQGFFVSIVYCYCNGEVQAE-VKKMWTRWNL 430

  Fly   587 SVRGHPEWAPKRA-----SMYSGAYNTAPDTDAVQP-----------AGDPSATGKRISPPNKRL 635
            |:    :|  |||     ..|.....|...:.:.|.           :|.|:....|....:..|
Mouse   431 SI----DW--KRAPPCGGQRYGSVLTTVTHSTSSQSQMGASTRLVLISGKPTKNACRQIDSHVTL 489

  Fly   636 NGRK-PSSASIVMIHEPQQRQRLMPRLQNKAREKGKD 671
            .|.. .||......|.|.:..:      ...|.:|.|
Mouse   490 PGYVWSSSEQDCQTHSPPEETK------EGHRRQGDD 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 14/58 (24%)
7tm_4 306..563 CDD:304433 77/283 (27%)
Pth2rNP_644676.1 HRM 63..125 CDD:280888 18/81 (22%)
7tm_2 139..406 CDD:278432 79/291 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 497..546 6/30 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4564
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D290902at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45620
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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