DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdfr and Pth1r

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:XP_036010598.1 Gene:Pth1r / 19228 MGIID:97801 Length:745 Species:Mus musculus


Alignment Length:529 Identity:140/529 - (26%)
Similarity:218/529 - (41%) Gaps:105/529 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 GLYCNWTWDTLLCWPPTPAGVLARMNCPGGFHGVDTRKFAIRKCELDGRWGSRP--NATEVNPPG 275
            |..|...||.::|||....|.:..:.||...:..:.:..|.|:|:.:|.|...|  |.|      
Mouse   259 GRPCLPEWDNIVCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWEVVPGHNRT------ 317

  Fly   276 WTDYGPCYKPEIIRLMQQMGSKDFDAYIDIARRTRTLEI---------VGLCLSLFALIVSLLIF 331
            |.:|..|.|                   .:...||..|:         ||..:||.:|.|::||.
Mouse   318 WANYSECLK-------------------FMTNETREREVFDRLGMIYTVGYSMSLASLTVAVLIL 363

  Fly   332 CTFRSLRNNRTKIHKNLFVAMVLQ---VIIRLTLYLDQFRRGNKEAATNTSLSVIENTP------ 387
            ..||.|...|..||.::|::.:|:   :.::..:....|.....|..|...|.:|...|      
Mouse   364 AYFRRLHCTRNYIHMHMFLSFMLRAASIFVKDAVLYSGFTLDEAERLTEEELHIIAQVPPPPAAA 428

  Fly   388 ---YL-CEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVW 448
               |. |..:.....|.....:.|:.:||||||:::.:|.|.....|..|:..||.:|.:...||
Mouse   429 AVGYAGCRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTIFGWGLPAVFVAVW 493

  Fly   449 ARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQASDI--- 510
            ........:|.   | |:.:.....||::.|.||.::|||...:||||||..|||::.|...   
Mouse   494 VGVRATLANTG---C-WDLSSGHKKWIIQVPILASVVLNFILFINIIRVLATKLRETNAGRCDTR 554

  Fly   511 EQTRKAVRAAIVLLPLLGITNLLHQLAPLKTATNFAVWSYGTHF---LTSFQGFFIALIYCFLNG 572
            :|.||.:|:.:||:||.|:...:....|. |..:..:|....|:   ..||||||:|:||||.||
Mouse   555 QQYRKLLRSTLVLVPLFGVHYTVFMALPY-TEVSGTLWQIQMHYEMLFNSFQGFFVAIIYCFCNG 618

  Fly   573 EVRAVLLKSLATQLSVRGHPEWA-----PKRASMYSGAYNTAP--DTDAVQPAGDPSATGKRISP 630
            ||:|.:.||.:         .|.     .::|...|.:|:..|  ...:|...|..:.....:||
Mouse   619 EVQAEIRKSWS---------RWTLALDFKRKARSGSSSYSYGPMVSHTSVTNVGPRAGLSLPLSP 674

  Fly   631 PNKRL-----NGR-------KPSSASIVMIHEPQQRQRLMPRLQNKAREKG------KDRVEKTD 677
               ||     ||.       ||.:.:|        ....:|......::.|      ....|:..
Mouse   675 ---RLLPATTNGHSQLPGHAKPGAPAI--------ENETIPVTMTVPKDDGFLNGSCSGLDEEAS 728

  Fly   678 AEAEPDPTI 686
            ..|.|.|.:
Mouse   729 GSARPPPLL 737

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 18/60 (30%)
7tm_4 306..563 CDD:304433 83/284 (29%)
Pth1rXP_036010598.1 PHA03247 <6..113 CDD:223021
HRM 259..324 CDD:397086 20/70 (29%)
7tm_GPCRs 338..630 CDD:421689 93/305 (30%)
TM helix 1 340..365 CDD:410628 8/24 (33%)
TM helix 2 374..396 CDD:410628 4/21 (19%)
TM helix 3 436..463 CDD:410628 8/26 (31%)
TM helix 4 475..495 CDD:410628 7/19 (37%)
TM helix 5 510..539 CDD:410628 12/28 (43%)
TM helix 6 556..583 CDD:410628 9/26 (35%)
TM helix 7 592..617 CDD:410628 12/24 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4564
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D290902at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45620
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.