DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdfr and Calcr

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_446268.2 Gene:Calcr / 116506 RGDID:621001 Length:533 Species:Rattus norvegicus


Alignment Length:493 Identity:139/493 - (28%)
Similarity:225/493 - (45%) Gaps:88/493 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 GLYCNWTWDTLLCWPPTPAGVLARMNCPGGFHGVDTRKFAIRKCELDGRWGSRPNATEVNPPGWT 277
            |.|||.|||..:||..|||||::..:||..|...|..:...:.|:.:|.|...|::...    |:
  Rat    86 GPYCNRTWDGWMCWDDTPAGVMSYQHCPDYFPDFDPTEKVSKYCDENGEWFRHPDSNRT----WS 146

  Fly   278 DYGPC--YKPEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNN 340
            :|..|  :.|:          |..:||:     ...|.:||..:|:.|||.|:.||..|::|...
  Rat   147 NYTLCNAFTPD----------KLHNAYV-----LYYLALVGHSMSIAALIASMGIFLFFKNLSCQ 196

  Fly   341 RTKIHKNLFVAMVLQVIIRLTLYLDQFRRGNKEAATNTSLSVIENTPYL---------------- 389
            |..:|||:|:..:|..||.:...::....|  :......:.:..:..|:                
  Rat   197 RVTLHKNMFLTYILNSIIIIIHLVEVVPNG--DLVRRDPMHIFHHNTYMWTMQWELSPPLPLSAH 259

  Fly   390 -------------CEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVP 441
                         |:..:...:|.....:.||..||:|||.::.:|||.....|:::..|||..|
  Rat   260 EGKMDPHDSEVISCKILHFFHQYMMACNYFWMLCEGIYLHTLIVMAVFTEDQRLRWYYLLGWGFP 324

  Fly   442 ILMTTVWARCTVMYMDTSLGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQ 506
            |:.|.:.|....:|.:.:   | |....|...:|:.||.:|.:::||.||:||:||||.|:||:.
  Rat   325 IVPTIIHAITRAVYYNDN---C-WLSTETHLLYIIHGPVMAALVVNFFFLLNIVRVLVTKMRQTH 385

  Fly   507 ASDIEQTRKAVRAAIVLLPLLGITNLLHQLAPLKTATNFAVWSYGTHFLTSFQGFFIALIYCFLN 571
            .::.....|||:|.:||:|||||..::....|...... .::.|..|.|..|||||:|.||||.|
  Rat   386 EAEAYMYLKAVKATMVLVPLLGIQFVVFPWRPSNKVLG-KIYDYLMHSLIHFQGFFVATIYCFCN 449

  Fly   572 GEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAGDPSATGKRISPPNKRLN 636
            .||: |.||....|..::....|..:|                 :|      |.:.:|.| :.:.
  Rat   450 HEVQ-VTLKRQWAQFKIQWSHRWGRRR-----------------RP------TNRVVSAP-RAVA 489

  Fly   637 GRKPSSASIVMIH-EPQQRQRLMPRLQNKAREKGKDRV 673
            ..:|....|.:.| ||:.     |.:.|...|:|.:.:
  Rat   490 FAEPGGLPIYICHQEPRN-----PPVSNNEGEEGTEMI 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 22/58 (38%)
7tm_4 306..563 CDD:304433 82/285 (29%)
CalcrNP_446268.2 HRM 86..154 CDD:280888 25/71 (35%)
7tm_2 162..441 CDD:278432 84/290 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4564
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001436
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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