DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdfr and sctr

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_001243568.1 Gene:sctr / 100537567 -ID:- Length:446 Species:Danio rerio


Alignment Length:413 Identity:112/413 - (27%)
Similarity:180/413 - (43%) Gaps:88/413 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 NLTLASAAATNFENCSALFVNYTLPQTGLYCNWTWDTLLCWPPTPAGVLARMNCPGGFHGVDTRK 250
            |.|.:|:..|   .||||                ||.|.|||...||......|| .|..|   |
Zfish    51 NRTESSSTHT---GCSAL----------------WDDLNCWPRAEAGETVSQPCP-SFLRV---K 92

  Fly   251 FAIRKCELDGRWGSRPNATEVNPPGWTDYGPCYK-------------PEIIRLMQQMGSKDFDAY 302
            .|:.|           |.||   .||:...|.|:             |....|:    |.::..|
Zfish    93 GAVMK-----------NCTE---NGWSVTFPPYELACGHGLNDSFHFPSDSVLV----SDEYFFY 139

  Fly   303 IDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQF 367
            :.|      :...|..:||.:|.::|.:.|.||.|...|..||..||::.:|:.   |.:::   
Zfish   140 VKI------MYSAGYAVSLVSLSIALTVLCVFRKLHCTRNFIHMQLFLSFILRA---LFIFI--- 192

  Fly   368 RRGNKEAATNTSLSV--IENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPL 430
                ::||.:.|...  ..:.|..|:.:..|..|...|.:.|:.:|..|||:::.:::......|
Zfish   193 ----RDAALHYSQEYYHCNSHPPGCKVALFLSNYCILANYSWLLVEAHYLHSLINLSLRSQKKRL 253

  Fly   431 KFFSRLGWCVPILMTTVWARCTVMYMDTSLGEC-----LWNYNLTPYYWILEGPRLAVILLNFCF 490
            .::..|||.:|:|:...|:....::.:....|.     :|        |||..|.:..|.:|..|
Zfish   254 HWYILLGWGIPMLIIISWSLAKYLHQNEGCWETRDHGWIW--------WILRVPVIIFITVNMLF 310

  Fly   491 LVNIIRVLVMKLRQS--QASDIEQTRKAVRAAIVLLPLLGITNLLHQLAPLKTAT-NFAVWSYGT 552
            .::|||.||.||:.:  ..::|...||..::..:|:.|.|:..:|....|.:.:. .|.:|:...
Zfish   311 FLSIIRTLVGKLKAADMHGNEINHHRKLAKSTFLLVSLFGLQYVLFAFFPDRVSVLTFKIWNVIE 375

  Fly   553 HFLTSFQGFFIALIYCFLNGEVR 575
            ..|.|.|||.:||:||||||||:
Zfish   376 LALASTQGFIVALLYCFLNGEVQ 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 18/58 (31%)
7tm_4 306..563 CDD:304433 67/266 (25%)
sctrNP_001243568.1 HRM 59..117 CDD:280888 27/94 (29%)
7tm_2 140..386 CDD:278432 68/269 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D290902at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45620
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.020

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