DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdfr and gcgr

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:XP_004916426.1 Gene:gcgr / 100487356 XenbaseID:XB-GENE-5918476 Length:483 Species:Xenopus tropicalis


Alignment Length:431 Identity:118/431 - (27%)
Similarity:180/431 - (41%) Gaps:78/431 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 PQTGLYCNWTWDTLLCWPPTPAGVLARMNCPGGF-------HGVDTRKFAIRKCELDGRWGSRPN 267
            |..||.||.|:|...|||.........:.||...       ||:     ..:.||.||:|..|  
 Frog    48 PAAGLVCNRTFDRYCCWPDALPNTTVSVPCPWFLPWHLKVQHGL-----VYKHCEPDGQWAER-- 105

  Fly   268 ATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFC 332
                      |...|...:     :|:..|.|..|.:.    :.:..||..:||..||::..|..
 Frog   106 ----------DAQECENDD-----KQIEDKYFKIYDNF----KIMYTVGYSVSLGTLILAFAILV 151

  Fly   333 TFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLD---QFRRGNKEAATNTSLSVIENTPYLCEASY 394
            .|..|...|..||.|||.:.:|:.:  ..|.||   :.|....|...:|.|.:.......|..:.
 Frog   152 GFSKLHCMRNYIHINLFASFILRAV--SVLVLDTMLKTRYNENEKFEDTHLWLSSEALVGCRVAA 214

  Fly   395 VLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTVMYMDTS 459
            ||::|...|.:.|:.:||:||:|::.:|||........:..:||..|.|....|......|.:|.
 Frog   215 VLMQYGIIANYYWLMVEGIYLYNLLVLAVFSERSYFALYLCIGWGAPALFIIPWVAVRYTYENTL 279

  Fly   460 LGECLWNYNLTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQASDIEQTRKAVRAAIVLL 524
               |....|...::||:....|..|::||...|.||::||.|:|..|....:...:..::.:.|:
 Frog   280 ---CWSTNNNMGFWWIIRSSVLLAIVINFVIFVRIIQILVSKMRAHQMRYTDYKFRLAKSTLTLI 341

  Fly   525 PLLGITNLLHQLAPLKTATNFAVWSYGT---------HFLTSFQGFFIALIYCFLNGEVRAVLLK 580
            |||||..:.....|.:|.       :||         .|::||||..:|::|||:|.||::.|||
 Frog   342 PLLGIHEVAFAFLPEETV-------HGTLRLVKLFFDLFISSFQGMLVAVLYCFVNKEVQSELLK 399

  Fly   581 SLATQLSVRGHPEWAPKRASM-------YSGAYNTAPDTDA 614
                        :|  ||..:       |...|...|...|
 Frog   400 ------------KW--KRWKLGKDIKGEYKHTYTQTPRVGA 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 19/65 (29%)
7tm_4 306..563 CDD:304433 75/268 (28%)
gcgrXP_004916426.1 HRM 51..113 CDD:367186 21/78 (27%)
7tmB1_GCGR 123..403 CDD:320395 87/309 (28%)
TM helix 1 127..152 CDD:320395 7/28 (25%)
TM helix 2 161..183 CDD:320395 8/23 (35%)
TM helix 3 211..238 CDD:320395 9/26 (35%)
TM helix 4 250..270 CDD:320395 5/19 (26%)
TM helix 5 286..315 CDD:320395 9/28 (32%)
TM helix 6 331..356 CDD:320395 6/24 (25%)
TM helix 7 365..390 CDD:320395 9/24 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D290902at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45620
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

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