DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdfr and LOC100335005

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:XP_002667894.2 Gene:LOC100335005 / 100335005 -ID:- Length:414 Species:Danio rerio


Alignment Length:443 Identity:139/443 - (31%)
Similarity:212/443 - (47%) Gaps:65/443 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 NLTLASA-AATNFENCSALFVNYTLPQTGLYCNWTWDTL-LCWPPTPAGVLARMNCPGGFHGV-- 246
            |.||..| ..|.:||.|  |.:.::  .|:|||.|.|.: .|||.:.:|.:....||...:||  
Zfish    17 NCTLLDAFQDTLYENSS--FASMSV--DGVYCNATTDEIGTCWPRSNSGRIIERPCPEYINGVKY 77

  Fly   247 DTRKFAIRKCELDGRWGSRPNATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDFDAYIDIARRTRT 311
            :|.:.|.|:|..:|.|..:.|.:...|                ::::  .:.:..:..||   ..
Zfish    78 NTTRIAYRECLENGTWALKSNYSNCEP----------------ILEE--KRKYPMHYKIA---LI 121

  Fly   312 LEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYL-DQFRRGNKEAA 375
            :...|.|:|:.|||::.::|...||:|..|..||.||....:|:.::...|.| ||         
Zfish   122 INYFGHCVSVGALIIAFILFLCLRSIRCLRNIIHWNLITTFILRNVMWFLLQLVDQ--------- 177

  Fly   376 TNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCV 440
                 ::.|.....|.....:..|.....|.|||:||.|||..:.:...........|..:|||:
Zfish   178 -----NIYETNEPWCRLITTIYNYFVVTNFFWMFVEGCYLHTAIVMTYSTDKLRKWVFLFIGWCI 237

  Fly   441 PILMTTVWARCTVMYMDTSLGECLWNYNLTPYY-WILEGPRLAVILLNFCFLVNIIRVLVMKLRQ 504
            |..:..||| ...:|.:..  :|.:......|. :|.:||.:.|:|:||.||.||:|:|:.|||.
Zfish   238 PCPIIIVWA-IAKLYNENE--QCWFGKEPGKYVDYIYQGPVILVLLINFVFLFNIVRILMTKLRA 299

  Fly   505 SQASDIEQTRKAVRAAIVLLPLLGITNLLHQLAPLKTATNFAVWSYGTHFLTSFQGFFIALIYCF 569
            |..|:..|.||||:|.:|||||||||.:|..:.|.:...:..|:.|...||.||||||:::.|||
Zfish   300 STTSETIQYRKAVKATLVLLPLLGITYMLFFVNPGEDDISQIVFIYFNSFLQSFQGFFVSVFYCF 364

  Fly   570 LNGEVRAVLLK-------------SLATQLSVRGHPEWAPKRASMYSGAYNTA 609
            ||||||:...|             .:|..:|:    ..:|.|.|.:|....||
Zfish   365 LNGEVRSAARKRWHRWQDNHALRVRVARAMSI----PTSPTRISFHSIKQTTA 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 21/61 (34%)
7tm_4 306..563 CDD:304433 88/258 (34%)
LOC100335005XP_002667894.2 HormR 40..111 CDD:214468 22/88 (25%)
7tm_2 121..358 CDD:278432 87/253 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4564
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2715
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.