DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdfr and vipr2

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_001120616.1 Gene:vipr2 / 100145780 XenbaseID:XB-GENE-966330 Length:435 Species:Xenopus tropicalis


Alignment Length:376 Identity:108/376 - (28%)
Similarity:170/376 - (45%) Gaps:60/376 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 CNWTWDTLLCWPPTPAGVLARMNCPGGFHGVDTRKFAIRKCELDGRWGSRPNATEV-NPPGWTDY 279
            |...||.:.||.....|.....|||.....:      :||         :.|.|.. ...||||.
 Frog    55 CIGIWDNITCWDTARHGEKVTQNCPVALRHI------LRK---------QGNITRTCKRTGWTDI 104

  Fly   280 GPCYKPEIIRLMQQMGSKD-----FDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRN 339
            .|       .:::..|..|     .:.||.:    :|:...|..:||.||.:...|.|.||.|..
 Frog   105 YP-------DIVEACGYNDSEPMKLNFYIIV----QTIYTFGHSVSLIALTIGSTILCLFRKLHC 158

  Fly   340 NRTKIHKNLFVAMVLQVIIRLTLYLDQFRRGNKEAATNTSLSVIENTPYLCEASYVLLEYARTAM 404
            .|..||.|:|::.:|:.|  ..|..|.|...|.|:...:.:.        |:...||::|...|.
 Frog   159 TRNYIHLNMFISFILKAI--SVLIKDGFLFSNPESCPESLIG--------CKVILVLMQYCVMAN 213

  Fly   405 FMWMFIEGLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTVMYMDTSLGECLWNYN- 468
            |.|:.:|||||..:: |.:|........:..:||.:|.:...:|....|...||   || |:.| 
 Frog   214 FYWLLVEGLYLQTLL-VVIFTSHKLFIVYLLIGWGIPTIFIIIWIVSRVYLDDT---EC-WDTND 273

  Fly   469 -LTPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQ--ASDIEQTRKAVRAAIVLLPLLGIT 530
             ..| :||:..|.:..|.||||..:||||:|:.||....  .:|..|.::..::.::|:||.|:.
 Frog   274 HSVP-WWIIRIPIIISITLNFCLFINIIRILLQKLLSPDVGGNDQSQFKRLAKSTLLLIPLFGVH 337

  Fly   531 NLLHQLAPLKTATNFAVWSYGTHF---LTSFQGFFIALIYCFLNGEVRAVL 578
            .::....|:.:.::..:|     |   :.||||..:|::|||||.||:..|
 Frog   338 YMVFVGFPMPSFSDCQIW-----FELCVGSFQGLVVAILYCFLNTEVQGEL 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 13/56 (23%)
7tm_4 306..563 CDD:304433 77/263 (29%)
vipr2NP_001120616.1 HRM 54..115 CDD:367186 19/81 (23%)
7tmB1_VIP-R2 125..389 CDD:320652 88/284 (31%)
TM helix 1 127..152 CDD:320652 7/28 (25%)
TM helix 2 161..183 CDD:320652 7/23 (30%)
TM helix 3 200..227 CDD:320652 11/26 (42%)
TM helix 4 238..258 CDD:320652 4/19 (21%)
TM helix 5 274..303 CDD:320652 13/29 (45%)
TM helix 6 319..346 CDD:320652 5/26 (19%)
TM helix 7 351..376 CDD:320652 10/29 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D290902at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.