DRSC/TRiP Functional Genomics Resources

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Protein Alignment tko and rpsL

DIOPT Version :10

Sequence 1:NP_001245490.1 Gene:tko / 31228 FlyBaseID:FBgn0003714 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_417801.1 Gene:rpsL / 947845 ECOCYCID:EG10911 Length:124 Species:Escherichia coli


Alignment Length:112 Identity:48/112 - (42%)
Similarity:66/112 - (58%) Gaps:1/112 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 MASLQQMHRSGPHIKTRPPRQP-LDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEMVA 107
            ||::.|:.|.....|......| |:..|..:||..:.....|||||||.||...|||:.|.|:.:
E. coli     1 MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTS 65

  Fly   108 YIPGIGHNLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ 154
            ||.|.|||||||:::|.|.||::|:|||:...|||..|.:.|..:.|
E. coli    66 YIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQ 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tkoNP_001245490.1 Ribosomal_S12 46..152 CDD:239466 45/106 (42%)
rpsLNP_417801.1 RpsL 1..124 CDD:439818 48/112 (43%)

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