DRSC/TRiP Functional Genomics Resources

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Protein Alignment gt and Cebpa

DIOPT Version :9

Sequence 1:NP_525049.1 Gene:gt / 31227 FlyBaseID:FBgn0001150 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_001274506.1 Gene:Cebpa / 24252 RGDID:2326 Length:395 Species:Rattus norvegicus


Alignment Length:313 Identity:57/313 - (18%)
Similarity:90/313 - (28%) Gaps:128/313 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 GSPSASPTSNLLYAAQMQQQQHQQQQQQQQQQQQLASLYPAFYYSNIKQEQATPTAAPPKVTPTA 191
            |:|:..|    |...|      :.:::.:.:|..||.|:|   |.        |...||...|.|
  Rat   186 GAPALRP----LVIKQ------EPREEDEAKQLALAGLFP---YQ--------PPPPPPPPHPHA 229

  Fly   192 NLLQTFAAASAAAAAAAAASSTNSPRPASNASTMQIDVLENPLSPAVEATTP-TTSSSGEAGKNT 255
            :... .||.......|....:|...:|.            :|..|.....:| ...:.|.||   
  Rat   230 SPAH-LAAPHLQFQIAHCGQTTMHLQPG------------HPTPPPTPVPSPHPAPAMGAAG--- 278

  Fly   256 RPFKAFPRDPLVIAANFAATDVLLDNPRVERYTEYRKRVLEQIRSSNGGS-RTVTNPKMRRTNSR 319
                                   |..|                    ||| :.:..|   ..:.|
  Rat   279 -----------------------LPGP--------------------GGSLKGLAGP---HPDLR 297

  Fly   320 SGSVNEGSSSNNNSESEDRAAAEESSDCDSQAGNFESKSATSSSSNLANATAANSGISSGSQVKD 384
            :|....|.                       ||..::|.:...:||                   
  Rat   298 TGGGGGGG-----------------------AGAGKAKKSVDKNSN------------------- 320

  Fly   385 AAYYERRRKNNAAAKKSRDRRRIKEDEIAIRAAYLERQNIELLCQIDALKVQL 437
             .|..||.:||.|.:||||:.:.:..|...:...|...|..|..:::.|..:|
  Rat   321 -EYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSREL 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gtNP_525049.1 bZIP_HLF 383..440 CDD:269843 16/55 (29%)
coiled coil 384..440 CDD:269843 16/54 (30%)
CebpaNP_001274506.1 bZIP_CEBPA 317..377 CDD:269859 18/76 (24%)
coiled coil 319..377 CDD:269859 18/74 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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