DRSC/TRiP Functional Genomics Resources

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Protein Alignment gt and Cebpa

DIOPT Version :9

Sequence 1:NP_525049.1 Gene:gt / 31227 FlyBaseID:FBgn0001150 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_001274443.1 Gene:Cebpa / 12606 MGIID:99480 Length:396 Species:Mus musculus


Alignment Length:429 Identity:80/429 - (18%)
Similarity:132/429 - (30%) Gaps:124/429 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 LGAALSQQQQQQQQQQQHQQLQQQHTS---SAEVLDLSRR---CDSVETPRKTPSPYQTSYSYGS 126
            ||....|::..|...::....::...|   ||:..::..|   ...:::|...||.....:..|:
Mouse    10 LGGRRRQRRHAQAGGRRGSPCRENSNSPMESADFYEVEPRPPMSSHLQSPPHAPSNAAFGFPRGA 74

  Fly   127 G-----SPSASP---------TSNLLYAAQMQQQQHQQQQQQQQQQQQLASLYPAFYYSNIKQEQ 177
            |     :|.|:|         .:::..:|.:.....        ..:.||.|   |.:|. :||:
Mouse    75 GPAPPPAPPAAPEPLGGICEHETSIDISAYIDPAAF--------NDEFLADL---FQHSR-QQEK 127

  Fly   178 ATPTAAPPKVTPTANLLQTFAAASAAAAAAAAASSTNSPRPASNASTMQIDVLENPLSPAVEATT 242
            |...|.|      |.....|....|.|....|..|..:..|...........|:..|.|..|.. 
Mouse   128 AKAAAGP------AGGGGDFDYPGAPAGPGGAVMSAGAHGPPPGYGCAAAGYLDGRLEPLYERV- 185

  Fly   243 PTTSSSGEAGKNTRPFKAFPRD-----PLVIAANFA-------------ATDVLLDNPRVERYTE 289
                  |.........|..||:     .|.:|..|.             |:...|..|.:     
Mouse   186 ------GAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPPHPHASPAHLAAPHL----- 239

  Fly   290 YRKRVLEQIRSSNGGSRT--------------VTNPKMRRTNSRSGSVNEGSSSNNNSESEDRAA 340
                   |.:.::.|..|              |.:|........:|....||:.        :..
Mouse   240 -------QFQIAHCGQTTMHLQPGHPTPPPTPVPSPHAAPALGAAGLPGPGSAL--------KGL 289

  Fly   341 AEESSDC-------DSQAGNFESKSATSSSSNLANATAANSGISSGSQVKDAAYYERRRKNNAAA 398
            |....|.       .|.||..::|.:...:||                    .|..||.:||.|.
Mouse   290 AGAHPDLRTGGGGGGSGAGAGKAKKSVDKNSN--------------------EYRVRRERNNIAV 334

  Fly   399 KKSRDRRRIKEDEIAIRAAYLERQNIELLCQIDALKVQL 437
            :||||:.:.:..|...:...|...|..|..:::.|..:|
Mouse   335 RKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSREL 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gtNP_525049.1 bZIP_HLF 383..440 CDD:269843 16/55 (29%)
coiled coil 384..440 CDD:269843 16/54 (30%)
CebpaNP_001274443.1 bZIP_CEBPA 318..378 CDD:269859 18/76 (24%)
coiled coil 320..378 CDD:269859 18/74 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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