DRSC/TRiP Functional Genomics Resources

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Protein Alignment PsGEF and Doc2g

DIOPT Version :10

Sequence 1:NP_996333.4 Gene:PsGEF / 31224 FlyBaseID:FBgn0264598 Length:2777 Species:Drosophila melanogaster
Sequence 2:XP_006230797.1 Gene:Doc2g / 293654 RGDID:1307473 Length:389 Species:Rattus norvegicus


Alignment Length:336 Identity:80/336 - (23%)
Similarity:131/336 - (38%) Gaps:86/336 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 RQATPQLA-ALRCLPRTTGGAVALEDSQLSSSRMGDTTLDRMLDAIIESARKEVRCT----KTL- 138
            |||  .|| |:...|:......|..||. .|:.:|  ||:..|  :.:.....:.||    |.| 
  Rat    54 RQA--MLAPAIHSAPQLQPNPEAEGDSD-DSTALG--TLEFTL--LFDVDNSTLHCTAHRAKGLK 111

  Fly   139 PGAGATTSTTILADNAEWSETSVHEMEVRTPTHLKRQRVVR-RKNP-----------------HK 185
            |.|..:..|.:.| |.....:.|...::||       |.|| .:.|                 .|
  Rat   112 PPATGSVDTYVKA-NLLPGASKVRASQLRT-------RTVRGTREPVWEETLTYHGFTCQDAGRK 168

  Fly   186 TTTI---NQTQSHQAKKLEPL--------QLVPSTKRCLSFSSSSASSDLDEDEQQVAKRSSLAS 239
            |..:   ..::..:.::..||        :|||:..|         |.|:..:::::.||     
  Rat   169 TLRLCVCEDSRLRRRRRAPPLGELRVPLRKLVPNRAR---------SFDICLEKRRLTKR----- 219

  Fly   240 PTTTPPSHCTTTTSSISSSSSSNGGADMEASQRGSIDVSIAFDAKEQQLNVHVIRCRDLQRSHGS 304
                |.|  ..|...:|........|::...:||.|.:|:.:.::...|.|.|:||..|  :...
  Rat   220 ----PKS--LDTARGMSLYEEEEVEAEVFREERGRILLSLCYSSERGGLLVGVLRCAHL--APMD 276

  Fly   305 GNGSINAYVKVALSGGAQPPGYGGHSSGGSMSSGYQRTAVHRHSGRPYFDQRFNFQISSGEETAG 369
            .||..:.:|::.|           |.|.|..|.  .:|:|.|.:..|.|::.| |.....||.|.
  Rat   277 ANGYSDPFVRLFL-----------HPSSGKKSK--YKTSVRRKTLNPEFNEEF-FYAGLREELAQ 327

  Fly   370 QYLQLAVWHRD 380
            :.|.::||..|
  Rat   328 KALLVSVWDYD 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PsGEFNP_996333.4 DUF4799 <99..209 CDD:318308 31/143 (22%)
C2 286..>381 CDD:425499 28/95 (29%)
PDZ_canonical 645..716 CDD:483948
RhoGEF 835..1007 CDD:470622
PRK12323 <2304..>2415 CDD:481241
Doc2gXP_006230797.1 C2A_Rabphilin_Doc2 84..211 CDD:176000 30/147 (20%)
C2 248..380 CDD:472691 30/107 (28%)
Blue background indicates that the domain is not in the aligned region.

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