DRSC/TRiP Functional Genomics Resources

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Protein Alignment Raf and ksr1b

DIOPT Version :9

Sequence 1:NP_001096867.3 Gene:Raf / 31221 FlyBaseID:FBgn0003079 Length:739 Species:Drosophila melanogaster
Sequence 2:XP_021322127.1 Gene:ksr1b / 556779 ZFINID:ZDB-GENE-040724-45 Length:982 Species:Danio rerio


Alignment Length:608 Identity:159/608 - (26%)
Similarity:262/608 - (43%) Gaps:150/608 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 TTHSGRHIIPWHTDIGTLHVEEIFVRLLDKFPIRTHIKHQIIRKTFFSLVFCEGCRRLLFTGFYC 249
            |||....:: ...|||           ||       :.|:...|::.|.. |:.|::.:..|..|
Zfish   383 TTHGSSPLV-MRKDIG-----------LD-------VTHRFSTKSWLSQT-CQVCKKNMMFGVKC 427

  Fly   250 SQCNFRFHQRCANRVPMLCQPFPMDSYYQLLLAENPDNGVGFPGRGTAVRFNMSSRSRSRRCSS- 313
            ..|..:.|.:|....|. |:    .|:.|            ||             ::.||..| 
Zfish   428 KHCKVKCHNKCTKEAPK-CR----ISFAQ------------FP-------------NKIRRTESV 462

  Fly   314 -SGSSSSSKPPSSS-------SGNHRQGRPPRISQDDRSNSAPNVCINNIRSVTSEVQRSLIMQA 370
             ||.::..:.|:.|       ...:::..||.:|..| |:|.|:...::..|..:...:|..:.|
Zfish   463 PSGINNQVERPAESQQYGTLPKAINKKDHPPSLSHLD-SSSNPSSTTSSTPSSPAPFGQSNPLSA 526

  Fly   371 RPPLPHP---------------C---------------TDHSNSTQASPTSTL-----KHNRPRA 400
            .|| |:|               |               :.||.......:..|     :.:....
Zfish   527 TPP-PNPSPKGSADSRFHFPAACYFQHRQQFVFPDVSSSSHSEGGYTGESDQLDGVASQSSSGHR 590

  Fly   401 RSADESNKNLLLRDAKSSEE---------------------------------NWNILAEEILIG 432
            ...|:..:....:|.:.|||                                 .|::..|::.:|
Zfish   591 EDVDDDQQGDDAQDQEGSEEESEDDEVDDLPKYSGHFKDYISRKASQTSVDLREWDVPFEQLELG 655

  Fly   433 PRIGSGSFGTVYRAHWHGPVAVKTLNVKTPSPAQLQAFKNEVAMLKKTRHCNILLFMG-CVSKPS 496
            ..||.|.:|.|.|..|||.|||:.|.:...:...|:.||.||...::|||.|::|||| |:..|.
Zfish   656 ELIGKGRWGKVCRGRWHGEVAVRLLEIDGNNQEHLKLFKKEVMNYRQTRHENVVLFMGACMHPPH 720

  Fly   497 LAIVTQWCEGSSLYKHVHVSETKFKLNTLIDIGRQVAQGMDYLHAKNIIHRDLKSNNIFLHEDLS 561
            |||:|.:|:|.:||..|.  ::|..:|.:..|.:::.:||.|||||.|:|:||||.|:| ::...
Zfish   721 LAIITSFCKGRTLYSVVR--DSKLDINKIRQIAQEIVKGMGYLHAKGIVHKDLKSKNVF-YDSNK 782

  Fly   562 VKIGDFGLATAKTRWSGEKQANQ---PTGSILWMAPEVIR------MQELNPYSFQSDVYAFGIV 617
            |.|.||||.........:::.|:   |.|.|.::|||::|      .::..|:|..:||||||.:
Zfish   783 VVITDFGLFGMSGVVQEDRRENELKLPRGWIYYLAPEIVRKIGPGNQEDCLPFSKAADVYAFGTI 847

  Fly   618 MYELLAECLPYGHISNKDQIL-FMVGRGL-LRPDMSQVRSDAPQALKRLAEDCIKYTPKDRPLFR 680
            .|||.|:..|.  |:...|:| :.:|.|. :|..::...:...:.:..:...|..:..:|||.|.
Zfish   848 WYELQAKAWPI--INQPTQVLIYQLGSGEGIRSLLTTKGTSLGKEVTEILSACWCFKAEDRPTFT 910

  Fly   681 PLLNMLENMLRTLPKIHRSASEP 703
            .|.::||.    |||::|..|.|
Zfish   911 QLSDLLEK----LPKLNRRLSHP 929

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RafNP_001096867.3 RBD_RAF 142..212 CDD:340514 6/26 (23%)
C1_Raf 221..269 CDD:410361 11/47 (23%)
STKc_Raf 435..687 CDD:270964 94/263 (36%)
ksr1bXP_021322127.1 KSR1-SAM 44..171 CDD:316101
C1 402..444 CDD:237996 10/42 (24%)
STKc_KSR1 651..929 CDD:271054 102/286 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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