DRSC/TRiP Functional Genomics Resources

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Protein Alignment Raf and raf1

DIOPT Version :9

Sequence 1:NP_001096867.3 Gene:Raf / 31221 FlyBaseID:FBgn0003079 Length:739 Species:Drosophila melanogaster
Sequence 2:XP_031755972.1 Gene:raf1 / 549871 XenbaseID:XB-GENE-6053330 Length:658 Species:Xenopus tropicalis


Alignment Length:641 Identity:305/641 - (47%)
Similarity:397/641 - (61%) Gaps:71/641 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 LTDSLGSQPG-----SQCGTLTRQPKI--LLRAHLPNQQRTSVEVISGVRLCDALMKALKLRQLT 177
            ::.::|.|.|     |..|.|:...|.  .:|.:|||:|||.|.|.||:.|.|.||||||:|.|.
 Frog    28 MSPTIGHQFGYQRRASDDGKLSDTSKTGSTMRVYLPNKQRTVVNVRSGMSLHDCLMKALKVRGLQ 92

  Fly   178 PDMCEV---STTHSGRHIIPWHTDIGTLHVEEIFVRLLDKFPIRTHIKHQIIRKTFFSLVFCEGC 239
            |:.|.|   .....|:..:.|:||..:|...|:.|..||..|:.|   |..:||||..|.||:.|
 Frog    93 PECCAVFRLIQDPKGKLRLDWNTDAMSLVGAELQVDFLDHVPLTT---HNFVRKTFLKLAFCDIC 154

  Fly   240 RRLLFTGFYCSQCNFRFHQRCANRVPMLCQPFPMDSYYQLLLAENPDNGVGFPGRGT-------- 296
            ::.|..||.|..|.::||:.|:.:||.:|..:  .:..||||..||:|..|  |..|        
 Frog   155 QKFLLNGFRCQTCGYKFHEHCSTKVPTMCVDW--SNIRQLLLFPNPNNMEG--GSHTLPSLTVRR 215

  Fly   297 ---AVRFNMSSRSRSRRCSSSGSSSSSKP--PSSSSGNHRQGRPPRISQDDRSNSAPNVCI---- 352
               :||..:||:   :|.|:....|.|.|  ||..|          :||..||.|.|||.:    
 Frog   216 MRESVRIPISSQ---QRYSTPHPFSFSTPSAPSECS----------LSQRQRSTSTPNVHMVSTT 267

  Fly   353 ---------NNIRSVT-SEVQRSLIMQARPPLPHPCTDHSNS---TQASPT--STLK-----HNR 397
                     ||..:|: |...|.|.|:.|..:    ..||:|   ...|||  |..|     |..
 Frog   268 MAVDSRLIENNWLNVSPSSWGRQLCMRGRDAV----RSHSDSGSPNNLSPTGWSNTKTPAPTHRE 328

  Fly   398 PRARSADESNKNLLLRDAKSSEENWNILAEEILIGPRIGSGSFGTVYRAHWHGPVAVKTLNVKTP 462
            ..|.|:.:....:..|..:.|...|.|.|.|:::..|||||||||||:..|||.||||.|.|..|
 Frog   329 KAASSSGQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVTNP 393

  Fly   463 SPAQLQAFKNEVAMLKKTRHCNILLFMGCVSKPSLAIVTQWCEGSSLYKHVHVSETKFKLNTLID 527
            :|.|||||:||||:|:||||.|||||||.::|.:||||||||||||||||:||.||||::..|||
 Frog   394 TPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKENLAIVTQWCEGSSLYKHLHVLETKFQMFQLID 458

  Fly   528 IGRQVAQGMDYLHAKNIIHRDLKSNNIFLHEDLSVKIGDFGLATAKTRWSGEKQANQPTGSILWM 592
            |.||.||||||||||||||||:|||||||||.|:||||||||||.|:||||.:|..|||||||||
 Frog   459 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSILWM 523

  Fly   593 APEVIRMQELNPYSFQSDVYAFGIVMYELLAECLPYGHISNKDQILFMVGRGLLRPDMSQVRSDA 657
            ||||||||:.||:|||||||::|||::||:...|||.||.::|||:|:||||...||:|::..:.
 Frog   524 APEVIRMQDNNPFSFQSDVYSYGIVLFELMTGELPYSHIRDRDQIIFLVGRGGTVPDLSKLYKNC 588

  Fly   658 PQALKRLAEDCIKYTPKDRPLFRPLLNMLENMLRTLPKIHRSASEPNLTQSQLQND 713
            |:|:|||..||||...::||||..:|:.:|.:..:||||:||||||:|.::....|
 Frog   589 PKAMKRLVADCIKKMREERPLFPQILSSIELLQHSLPKINRSASEPSLHRAAHTED 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RafNP_001096867.3 RBD_RAF 142..212 CDD:340514 31/72 (43%)
C1_Raf 221..269 CDD:410361 19/47 (40%)
STKc_Raf 435..687 CDD:270964 174/251 (69%)
raf1XP_031755972.1 RBD_CRAF 56..130 CDD:340655 31/73 (42%)
C1_A_C-Raf 135..186 CDD:410420 21/53 (40%)
STKc_C-Raf 347..629 CDD:271051 185/281 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 376 1.000 Domainoid score I858
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 569 1.000 Inparanoid score I1051
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D129822at33208
OrthoFinder 1 1.000 - - FOG0001587
OrthoInspector 1 1.000 - - otm48176
Panther 1 1.100 - - O PTHR44329
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X994
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.160

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