DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Raf and ksr

DIOPT Version :9

Sequence 1:NP_001096867.3 Gene:Raf / 31221 FlyBaseID:FBgn0003079 Length:739 Species:Drosophila melanogaster
Sequence 2:NP_001287177.1 Gene:ksr / 40660 FlyBaseID:FBgn0015402 Length:966 Species:Drosophila melanogaster


Alignment Length:867 Identity:226/867 - (26%)
Similarity:343/867 - (39%) Gaps:236/867 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SSESSTEGDSDLYDPLAEELH--NVQLVKHVTRENIDALNAKFANLQEPPAMYLIEYQELTSKLH 64
            |.||.|...::  ||  |:.|  :.....|:.|.::..:.....:...|...:         :.|
  Fly   171 SLESGTAASNN--DP--EQWHWDSWDRPTHIHRGSVGNIGLGNNSTASPRTHH---------RQH 222

  Fly    65 ELEAKEQELMERLNSQDQQEDSSLVERFKEQPHYQNQTQILQQQRQLARVHHGNDLTDSLG---- 125
            .::.|...|....|.:..::..|..|..       |.||..|....|......:..|.|.|    
  Fly   223 GVKGKNSALANSTNFKSGRQSPSATEEL-------NSTQGSQLTLTLTPSPPNSPFTPSSGLSSS 280

  Fly   126 -----------SQPGSQCGTLTRQPKI------LLRAHLP------NQQRTSVEVI--------S 159
                       ..|..:..||..|..:      |.|..||      :...||.::.        |
  Fly   281 LNGTPQRSRGTPPPARKHQTLLSQSHVQVDGEQLARNRLPTDPSPDSHSSTSSDIFVDPNTNASS 345

  Fly   160 GVRLCDALMKALKLRQLTPDMCEVSTTHSGRHIIPWHTDIGTLHVEEIFVRLLDKFPIRTHIKHQ 224
            |....:.||        .|  |.....|           :|..|.                |||:
  Fly   346 GGSSSNVLM--------VP--CSPGVGH-----------VGMGHA----------------IKHR 373

  Fly   225 IIRKTFFSLVFCEGCRRLLFTGFY-CSQCNFRFHQRCANRVPMLCQPFPMD------------SY 276
            ..:...| :..|..|::.:|..:. |:.|.:..|:.||..||..| ..|.:            .|
  Fly   374 FTKALGF-MATCTLCQKQVFHRWMKCTDCKYICHKSCAPHVPPSC-GLPREYVDEFRHIKEQGGY 436

  Fly   277 YQLLLAENPDNG--------VGFP-----GRGTAVRFNMSS---------RSRSRRCSSSGSSSS 319
            ..|........|        :|.|     |..::...:.:|         :.|.|....:|||||
  Fly   437 ASLPHVHGAAKGSPLVKKSTLGKPLHQQHGDSSSPSSSCTSSTPSSPALFQQRERELDQAGSSSS 501

  Fly   320 SK-PPSSSSGNHR--QGRPPRI------------------------------------------- 338
            :. .|:.|.|.|:  |...|.:                                           
  Fly   502 ANLLPTPSLGKHQPSQFNFPNVTVTSSGGSGGVSLISNEPVPEQFPTAPATANGGLDSLVSSSNG 566

  Fly   339 -------SQDDRSNSAPNVCINNIRSVTSEVQRSLI--------MQARPPLPHPCTDHSNSTQAS 388
                   ||...:::|..:..:.:.|.|:....|..        :..|.|.....||...|..:.
  Fly   567 HMSSLIGSQTSNASTAATLTGSLVNSTTTTSTCSFFPRKLSTAGVDKRTPFTSEYTDTHKSNDSD 631

  Fly   389 PT-------STLKHNRP-RARSADESNKNLLLRDAKSSEENWNILAEEILIGPRIGSGSFGTVYR 445
            .|       ||.....| |..|.::.:.....:::.|.:| |:|...::|:..|||.|.||||:|
  Fly   632 KTVSLSGSASTDSDRTPVRVDSTEDGDSGQWRQNSISLKE-WDIPYGDLLLLERIGQGRFGTVHR 695

  Fly   446 AHWHGPVAVKTLNVK-TPSPAQLQAFKNEVAMLKKTRHCNILLFMG-CVSKPSLAIVTQWCEGSS 508
            |.|||.||||.||.. ......|:.|::|||..|.|||.|::|||| |::.|.|||||..|:|::
  Fly   696 ALWHGDVAVKLLNEDYLQDEHMLETFRSEVANFKNTRHENLVLFMGACMNPPYLAIVTSLCKGNT 760

  Fly   509 LYKHVHVSETKFKLNTLIDIGRQVAQGMDYLHAKNIIHRDLKSNNIFLHEDLSVKIGDFGLATAK 573
            ||.::|....||.:|..:.|.:|:||||.||||:.|||:||::.|||: |:..|.|.||||.::.
  Fly   761 LYTYIHQRREKFAMNRTLLIAQQIAQGMGYLHAREIIHKDLRTKNIFI-ENGKVIITDFGLFSST 824

  Fly   574 TRWSGEKQANQPTGSILWMAPEVIR-MQ---------ELNPYSFQSDVYAFGIVMYELLAECLPY 628
            .....:.....|...:.::|||:|| :|         |..||   ||||:||.|.|||:.     
  Fly   825 KLLYCDMGLGVPHNWLCYLAPELIRALQPEKPRGECLEFTPY---SDVYSFGTVWYELIC----- 881

  Fly   629 GHISNKDQ----ILFMVGRGLLRPDMSQVRSDAPQALKRLAEDCIKYTPKDRPLFRPLLNMLENM 689
            |..:.|||    |::.|||| ::..::.::|.  :.:|.|...|..|..:.||.|..||::||: 
  Fly   882 GEFTFKDQPAESIIWQVGRG-MKQSLANLQSG--RDVKDLLMLCWTYEKEHRPQFARLLSLLEH- 942

  Fly   690 LRTLPK--IHRSASEP-NLTQS 708
               |||  :.||.|.| ||::|
  Fly   943 ---LPKKRLARSPSHPVNLSRS 961

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RafNP_001096867.3 RBD_RAF 142..212 CDD:340514 15/83 (18%)
C1_Raf 221..269 CDD:410361 14/48 (29%)
STKc_Raf 435..687 CDD:270964 111/267 (42%)
ksrNP_001287177.1 KSR1-SAM 33..166 CDD:290277
C1_1 368..419 CDD:278556 16/68 (24%)
PK_KSR 678..946 CDD:270965 117/283 (41%)
Pkinase_Tyr 679..940 CDD:285015 113/272 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445237
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D27941at33392
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.850

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