DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Raf and ksr1

DIOPT Version :9

Sequence 1:NP_001096867.3 Gene:Raf / 31221 FlyBaseID:FBgn0003079 Length:739 Species:Drosophila melanogaster
Sequence 2:XP_031751648.1 Gene:ksr1 / 100494230 XenbaseID:XB-GENE-1004628 Length:885 Species:Xenopus tropicalis


Alignment Length:841 Identity:203/841 - (24%)
Similarity:325/841 - (38%) Gaps:225/841 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 YDPLAEELHNV----QLVKHVTRE-NIDALNAKFANLQEPPAMYLIEYQELTSKLHELEAKE--- 70
            |..:::.||.:    ::|..|:.| .:|||                      .:|:||:.||   
 Frog   101 YPRVSDWLHTISVRNEVVHKVSEELTLDAL----------------------LELNELKVKETMK 143

  Fly    71 -----QELMERLNSQDQQEDSSLVERFKEQPHYQNQTQILQQQRQLARVHHGNDLTDSLGSQP-- 128
                 .|...|||.                        .|...::|||  .|.|:.|:|.:.|  
 Frog   144 KCGANTEECSRLNG------------------------ALTCLKKLAR--SGGDMKDTLWNPPEM 182

  Fly   129 ------------GSQCG-----------TLTRQPKILLRAHLPNQQRTSV-EVISGVRLCDALMK 169
                        .|..|           |.:.||:.:..:.:|..:.:|. ..|....|.|....
 Frog   183 RKESSSQVPSDISSPVGAAWTLNSQPPKTNSHQPRSISVSAIPFSESSSQGPYIYAENLQDPFSS 247

  Fly   170 ALKLRQLTPDMCEVSTTHS--------------------------GR----HIIPWHTDIGTL-- 202
            :..:.:||     :.|.|.                          ||    .::|   :..||  
 Frog   248 STPISRLT-----LRTPHGFTITPPTTPQLKRAIKLKPPRTPPPPGRKVFQQLLP---NFSTLKR 304

  Fly   203 ---HVEEIFVRLLDKFP-----------------IRTHIKHQIIRKTFFSLVFCEGCRRLLFTGF 247
               |..::..| :|:.|                 |...:.|:...|::.|.: |..|::.:..|.
 Frog   305 SKSHESQLGNR-IDEVPSLKFDLPQGSPQMVRRDIGLSVTHRFSTKSWLSQM-CHVCQKSMMFGV 367

  Fly   248 YCSQCNFRFHQRCANRVPMLC-------------QPFPMDSYYQLLLAENPDNGVGFPGRGTAVR 299
            .|..|..:.|.:|....|. |             :..|.|...|:.....|..|. .|...|...
 Frog   368 KCKHCKLKCHNKCTKDAPS-CRISFLPIAKIRRTESVPSDINNQVDRPAEPHFGT-LPKALTKKE 430

  Fly   300 FNMSSR---SRSRRCSSSGSSSSSKPPSSSSGNHRQGRPPRIS----QDDRSNSA---------- 347
            .:.:..   |.|...|::.|:.||..|..||.......||..|    :|.|.|..          
 Frog   431 HSPAINHLDSSSNPSSTTSSTPSSPAPFQSSNPSSAITPPNPSPIGPRDSRFNFPAAYYIQHRQQ 495

  Fly   348 ---PNVCINNIRSVTSEVQRSLIMQARPPLPHPCTD------------HSNSTQASPTSTLKHNR 397
               |.|.:....|..||...:...:|...     ||            .:|.::...........
 Frog   496 FIFPEVSVTAQASHVSETSENSSAEAEME-----TDVAEEQEAEVEEQDANKSEPEYDDDELDEL 555

  Fly   398 PRARSADESNKNLLLRDAKSSE---ENWNILAEEILIGPRIGSGSFGTVYRAHWHGPVAVKTLNV 459
            |.:|....:.:.:::|.|..:.   :.|:|..|:|.:|..||.|.:|.|:|..|||.||::.|.:
 Frog   556 PNSRYTSGTFRGMIIRKASQTSVYLQEWDIPFEQIELGELIGQGRWGKVFRGKWHGEVAIRLLEI 620

  Fly   460 KTPSPAQLQAFKNEVAMLKKTRHCNILLFMG-CVSKPSLAIVTQWCEGSSLYKHVHVSETKFKLN 523
            ...:...|:.||.||...::|||.|::|||| |:..|.|||:|.:|:|.:||..|...:|...:|
 Frog   621 DGNNQDHLKLFKKEVMNYRQTRHENVVLFMGACMHPPHLAIITSFCKGRTLYSFVRDPKTSLDIN 685

  Fly   524 TLIDIGRQVAQGMDYLHAKNIIHRDLKSNNIFLHEDLSVKIGDFGLATAKTRWSGEKQANQPTGS 588
            ....|.:::.:||.|||||.|:|:||||.|:| :|:..|.|.||||..........::.|:...|
 Frog   686 KTRQIAQEIIKGMGYLHAKGIVHKDLKSKNVF-YENGKVVITDFGLFGISGVVQEGRRENELKLS 749

  Fly   589 ILW---MAPEVIRM------QELNPYSFQSDVYAFGIVMYELLAECLPYGHISNKDQILFMVGRG 644
            ..|   :|||::|.      ::..|:|..:|:||||.:.|||.|...|... ...:.:::.:|.|
 Frog   750 HDWLCYLAPEIVREMTPGKGEDTLPFSKAADIYAFGTIWYELQARDWPLKR-QAAEALIWQIGSG 813

  Fly   645 LLRPDMSQVRS--DAPQALKRLAEDCIKYTPKDRPLFRPLLNMLENMLRTLPKIHRSASEP 703
               ..|.||.|  ...:.:..:...|..:...:||.|..|::|||.    |||::|..|.|
 Frog   814 ---EGMKQVLSTISLGKEVTEILAACWAFDVNERPSFTLLMDMLEK----LPKLNRRLSHP 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RafNP_001096867.3 RBD_RAF 142..212 CDD:340514 16/105 (15%)
C1_Raf 221..269 CDD:410361 12/60 (20%)
STKc_Raf 435..687 CDD:270964 92/263 (35%)
ksr1XP_031751648.1 KSR1-SAM 18..163 CDD:404435 19/107 (18%)
C1_KSR1 342..388 CDD:410422 11/47 (23%)
STKc_KSR1 589..867 CDD:271054 101/286 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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