DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2854 and Tcaim

DIOPT Version :9

Sequence 1:NP_569999.1 Gene:CG2854 / 31219 FlyBaseID:FBgn0040391 Length:491 Species:Drosophila melanogaster
Sequence 2:XP_006244254.1 Gene:Tcaim / 363169 RGDID:1560717 Length:507 Species:Rattus norvegicus


Alignment Length:509 Identity:132/509 - (25%)
Similarity:217/509 - (42%) Gaps:70/509 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 YCRRLLSTDLVTALRPFYQAIRTDGLAHNPAEKRVNEESLRLLCSHLESLTGPSASCLPPDGHLE 79
            |.|.|...:.:.||||||.|:..|....:|.|:.|||.||:.|..:||:|..|....|.|. .|.
  Rat    33 YSRALSGAEAINALRPFYFAVHPDFFGQHPREREVNENSLKRLSVYLENLQKPGFKSLKPT-QLT 96

  Fly    80 FYI---PSGSDESGSRVVS----RLVRVQVDRSLLDPRAVICQILRSCKLLPKEKEQEQMKRGQE 137
            |||   .:.:...|...||    |.||..:..|  |..:.:..||.||. ||.|..|        
  Rat    97 FYIREKTAQNSSEGQEPVSTTGFRAVRFTLHSS--DLLSTVLYILNSCS-LPVEHVQ-------- 150

  Fly   138 MEKELGKVLRKEPVRERVRPPQAPVQKNLSALREL-FKD--------AKREHSLEIWM----RQA 189
               .|...:..:|::|....|..|::.:.|..... |||        ::.|.:|..|:    :.|
  Rat   151 ---SLNTNVHSQPLKEATGMPDRPIKWHRSYYSFTGFKDPDEDLEHVSRVETTLTSWLGSNGKGA 212

  Fly   190 LARSQASEVATLRGKIEGIEAALVQLLGIRGTRYDCGCNMERYHNCLSILKGLSEDPKVAGQ-LG 253
            :.:.:.|  ..||.:::.::..|.:||.:...|:..|..:.  |.| |.|..||   ::|.| |.
  Rat   213 VKKLKNS--LPLRKELDRLKNELSELLQLSDIRWQRGWGVA--HRC-SQLHSLS---RLAQQNLE 269

  Fly   254 ALRNR---FVVFAPYTGISLEGDVMLFSGDSPSGWLAFLSEMRLHEEQLRLVPLYEKALSAVLLG 315
            .|:|.   .:||...:|:|..|.|||.:.|....|......:..:.:..|.:...|..:|.:|.|
  Rat   270 PLQNAKGCTIVFTDRSGMSALGHVMLGTMDVHHHWTRLFESLPNYFDLQRRMSALEDQISHLLGG 334

  Fly   316 IRIERRRVPEPGCEARAYAGSLRRVIRAVSEHLRLEDS---------VQELPASLQDHHLAIVPD 371
            |::             .|...|:..: .:.|:..|.|:         ....|.||....:.:..|
  Rat   335 IQV-------------VYIEELQPAL-TLDEYYSLLDTFYNQLQRSRAPPRPQSLSGLQMILSSD 385

  Fly   372 SDIPKVSQTGLFLAPASCSGPDLVEFICRNLDVASGRFSRYRRDIQVERQLWRQCQEELGLQRLS 436
            ...|.:.:.|.|..||......|..|:......|.....|..:...:|.:|.:....:..|::|.
  Rat   386 RYAPSLHELGHFNIPALSDPASLQSFMRTKAQQARENMRRREKLKVIENELIQASTRKFSLEKLY 450

  Fly   437 KDDSVTPDKMVMAIRHLLQSGVKSCRGLSLHITNYWSVPTDGIVCIPWDFMSRE 490
            |:.|::..:||...:.||:..:....|:.|.:::::||..||.:||||::...|
  Rat   451 KEPSISSRQMVDCCKRLLEQSLPYLHGMHLCVSHFYSVMQDGDLCIPWNWKKGE 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2854NP_569999.1 DUF4460 15..117 CDD:291359 37/108 (34%)
DUF4461 181..486 CDD:291360 76/321 (24%)
TcaimXP_006244254.1 DUF4460 33..138 CDD:405388 37/107 (35%)
DUF4461 200..500 CDD:405389 76/321 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166344535
Domainoid 1 1.000 145 1.000 Domainoid score I4461
eggNOG 1 0.900 - - E1_28KZH
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 211 1.000 Inparanoid score I3574
OMA 1 1.010 - - QHG47934
OrthoDB 1 1.010 - - D532678at33208
OrthoFinder 1 1.000 - - FOG0006588
OrthoInspector 1 1.000 - - otm44378
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR31596
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4830
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.870

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