DRSC/TRiP Functional Genomics Resources

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Protein Alignment temp and RABGGTA

DIOPT Version :9

Sequence 1:NP_001284818.1 Gene:temp / 31212 FlyBaseID:FBgn0027296 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_004572.3 Gene:RABGGTA / 5875 HGNCID:9795 Length:567 Species:Homo sapiens


Alignment Length:356 Identity:79/356 - (22%)
Similarity:138/356 - (38%) Gaps:73/356 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 RRQTTAQQLRTLQQQQQS-----------DSLAKYLNVALLINPDVTTFWHIRRQLVQKNRLS-- 126
            :|....|:|:..|...|:           :|:.:..:..|..|||..|.|:.||:::|:....  
Human    17 KRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKS 81

  Fly   127 -------INKELQFSALVLSIKPKSNEAFAYRRWLYSFQSADAIDWPNEIGICERAADRCASNYH 184
                   :..||.|....|.:.|||...:.:|.||..  .....:|..|:.:|.|..:....|:|
Human    82 PEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLG--RLPEPNWTRELELCARFLEVDERNFH 144

  Fly   185 AWSHRQWILQNGPCLLQSELLRTEKFMRKHISDYSCYHYRQVLLSRAYELSFALPK-DSGASG-- 246
            .|.:|:::..........||..|:..:.::.|:||.:|||..||.:.:      |: |||..|  
Human   145 CWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH------PQPDSGPQGRL 203

  Fly   247 --SSTLASLQHLMTSYGLECEANAED-------LLGLLLPHVDLSSVSKQRLISFLYCCNVAAND 302
              ...|..|:.:..::  ..:.|.:.       |||...|.            ..|.|.:|:.::
Human   204 PEDVLLKELELVQNAF--FTDPNDQSAWFYHRWLLGRADPQ------------DALRCLHVSRDE 254

  Fly   303 --MRLCAEQRLMYGSRDCFELHRRAALKFIVEQCVRLQMGLPNGQL---------LPVASGDLRS 356
              :.:...:.|:.|||      ....|..:.:..:.::...|:|:.         ||.||  |..
Human   255 ACLTVSFSRPLLVGSR------MEILLLMVDDSPLIVEWRTPDGRNRPSHVWLCDLPAAS--LND 311

  Fly   357 HLGNFDFEDNPFLSAVRREESTLGGKHRRWC 387
            .|....|........|::|...|.|:...||
Human   312 QLPQHTFRVIWTAGDVQKECVLLKGRQEGWC 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tempNP_001284818.1 PPTA 168..195 CDD:279565 7/26 (27%)
RABGGTANP_004572.3 PPTA 1..>237 CDD:332411 53/229 (23%)
PFTA 1 44..78 10/33 (30%)
PFTA 2 88..122 10/35 (29%)
PFTA 3 124..158 8/33 (24%)
PFTA 4 159..193 11/39 (28%)
PFTA 5 207..241 6/35 (17%)
RabGGT_insert 245..345 CDD:311580 23/106 (22%)
PFTA 6 363..397
LRR 1 442..463
leucine-rich repeat 443..461 CDD:275378
leucine-rich repeat 462..487 CDD:275378
LRR 2 464..486
LRR_9 <468..>546 CDD:317038
LRR 3 487..508
leucine-rich repeat 488..509 CDD:275378
LRR 4 509..530
leucine-rich repeat 510..534 CDD:275378
LRR 5 534..555
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5536
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1527547at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.820

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