DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crn and AT3G13210

DIOPT Version :9

Sequence 1:NP_477118.1 Gene:crn / 31208 FlyBaseID:FBgn0000377 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_187927.1 Gene:AT3G13210 / 820511 AraportID:AT3G13210 Length:657 Species:Arabidopsis thaliana


Alignment Length:678 Identity:331/678 - (48%)
Similarity:447/678 - (65%) Gaps:62/678 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KMPKVAKVKNKAPAEVQITAEQLLREAKERDLEILPPPPKQKISDPAELADYQQRKRKTFEDNLR 70
            |:|::.:||||.||.:||||||:||||:||. |....||.|.|:|.|||:||:.|:||.|||.:|
plant    22 KLPRMTQVKNKTPAPIQITAEQILREARERQ-EAEFRPPNQTITDSAELSDYRLRRRKEFEDQIR 85

  Fly    71 KNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDR 135
            :.|:                                  |..:|:|||:.|||||.||.|||:|||
plant    86 RARL----------------------------------NTQVWVKYADFEMKNKSVNEARNVWDR 116

  Fly   136 AVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEIDRAREIY 200
            ||:::|||:|.|||:.:|||.|.|:|||||:.|||:...|::|||..::.|||:|.||:.||.||
plant   117 AVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIKFELKYNEIECARSIY 181

  Fly   201 ERFVYVHPDVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLFIAFARFEEGQKEHDR 265
            ||||..||.|..:|::|:||..||.:..:.:|||||.:...||...|.||:|||.|||.      
plant   182 ERFVLCHPKVSAYIRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEFEEQ------ 240

  Fly   266 ARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFD 330
                ||:|||.:||.|.:.|:..:...||:.||:.||||.|:.||:.|||.||..||.|||:|||
plant   241 ----YKFALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYDSWFD 301

  Fly   331 YLRLIEAEGDRDQIRETYERAISNVPP--ANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYK 393
            ::||.|..|::|:|||.||||::||||  |.||.:|:||||||||||.:.|:..||.|.||.:|:
plant   302 FVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDVYR 366

  Fly   394 TCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGMCPRDKLFRGYIDLEIQLREFER 458
            .||:||||.:|:|:|:|||.||.|||...|..||:.||.|||..|:||:|:.||::|:|||..:|
plant   367 ACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLRNIDR 431

  Fly   459 CRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYIDFEVAL 523
            ||.|||::||:.|.||..|.|:||.|..|.:|:|.|||||||:.||.|||||||||.|||||::.
plant   432 CRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALDMPELLWKTYIDFEISE 496

  Fly   524 GETELARQLYERLLERTQHVKVWMSFAKFEMGLS-HGDSGPDAEL------NVQLARRIYERAN- 580
            ||.|..|.||||||:||:|.|||:.|||||...: |.:...:.:.      .::.||.|::||| 
plant   497 GELERTRALYERLLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIFDRANT 561

  Fly   581 ---EMLRQLGDKESRVLLLEAWRDFERDASDSQEMQKVMDKMPRRIKKRQKIVSDNGVEEGWEEV 642
               :...:|  ||.|.:|||.|.:.|.......:::.|..|:|:::|||:....::|..| :||.
plant   562 YNKDSTPEL--KEERAMLLEDWLNMETGFGKLGDVRVVQSKLPKKVKKRKLSSREDGCTE-YEEY 623

  Fly   643 FDYIFPEDEMARPNLKLLAAAKMWKTQK 670
            .||:||| |....:||:|.||..||.||
plant   624 TDYLFPE-ESETTSLKILEAAHKWKKQK 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crnNP_477118.1 HAT 94..122 CDD:214642 6/27 (22%)
TPR repeat 109..139 CDD:276809 20/29 (69%)
TPR repeat 144..172 CDD:276809 17/27 (63%)
RNA14 <180..539 CDD:227438 197/360 (55%)
HAT 191..222 CDD:111114 17/30 (57%)
TPR repeat 473..503 CDD:276809 17/29 (59%)
TPR repeat 508..538 CDD:276809 21/29 (72%)
AT3G13210NP_187927.1 TPR repeat 90..120 CDD:276809 20/29 (69%)
TPR repeat 125..152 CDD:276809 16/26 (62%)
TPR repeat 159..183 CDD:276809 13/23 (57%)
HAT 173..201 CDD:111114 15/27 (56%)
Suf <452..>509 CDD:283497 37/56 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1915
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6462
Inparanoid 1 1.050 788 1.000 Inparanoid score I94
OMA 1 1.010 - - QHG54523
OrthoDB 1 1.010 - - D355408at2759
OrthoFinder 1 1.000 - - FOG0003119
OrthoInspector 1 1.000 - - otm2457
orthoMCL 1 0.900 - - OOG6_101977
Panther 1 1.100 - - O PTHR11246
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2089
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

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