DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment crn and syf-3

DIOPT Version :9

Sequence 1:NP_477118.1 Gene:crn / 31208 FlyBaseID:FBgn0000377 Length:702 Species:Drosophila melanogaster
Sequence 2:NP_001122979.1 Gene:syf-3 / 178979 WormBaseID:WBGene00019762 Length:747 Species:Caenorhabditis elegans


Alignment Length:698 Identity:422/698 - (60%)
Similarity:555/698 - (79%) Gaps:25/698 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RPQKMP-KVAKVKNKAPAEVQITAEQLLREAKERDLEILPPPPKQKISDPAELADYQQRKRKTFE 66
            :|.::| |.|||||||||::||||||||||||||:||::||.||.||:||.||.:||::|||.||
 Worm    12 KPIRLPKKAAKVKNKAPAQLQITAEQLLREAKERELELIPPAPKTKITDPDELKEYQRKKRKEFE 76

  Fly    67 DNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARN 131
            |.:|||||.:::||||.:|||...|||||||::|||||.:||::::||:||||||:.||:|||||
 Worm    77 DGIRKNRMQLANWIKYGKWEESIGEIQRARSVFERALDVDHRSISIWLQYAEMEMRCKQINHARN 141

  Fly   132 LWDRAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEIDRA 196
            ::|||:|||||..|||.||:||||::||:.||||:||||:||:|.|||||||:||||||||||||
 Worm   142 VFDRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPEQAWQTYINFELRYKEIDRA 206

  Fly   197 REIYERFVYVHP-DVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLFIAFARFEEGQ 260
            |.:|:||::||. :|:||||:|:|||.:|:|..:|..:|:|:|:||::.|.|.:.:|||.|||.|
 Worm   207 RSVYQRFLHVHGINVQNWIKYAKFEERNGYIGNARAAYEKAMEYFGEEDINETVLVAFALFEERQ 271

  Fly   261 KEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNY 325
            |||:|||.|:||.||:||.:||:|:||.||:||||:|:|.||||||:||||.|||:.|..|..||
 Worm   272 KEHERARGIFKYGLDNLPSNRTEEIFKHYTQHEKKFGERVGIEDVIISKRKTQYEKMVEENGYNY 336

  Fly   326 DAWFDYLRLIE-AEGDRDQIRETYERAISNVPPAN---EKNFWRRYIYLWINYALYEELEAEDAE 386
            |||||||||:| .|.||:::.:.|||||:|:||.:   ||.:|||||||||||||||||.|:|.:
 Worm   337 DAWFDYLRLLENEETDREEVEDVYERAIANIPPHSYFQEKRYWRRYIYLWINYALYEELVAKDFD 401

  Fly   387 RTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGMCPRDKLFRGYIDLEI 451
            |.||:||.|:::||||.|||:|:|:::|.||||..:|..|||.:|:|||.||:|||||.|||||:
 Worm   402 RARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDLNAARKIMGVAIGKCPKDKLFRAYIDLEL 466

  Fly   452 QLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELAVQQPRLDMPELLWKAY 516
            |||||:|||.|||||||..||:..||:||||||.|||||||:||:|.:|||||.|||||||||||
 Worm   467 QLREFDRCRKLYEKFLESSPESSQTWIKFAELETLLGDTDRSRAVFTIAVQQPALDMPELLWKAY 531

  Fly   517 IDFEVALGETELARQLYERLLERTQHVKVWMSFAKFEMGLSHGDSGPDAELNVQLARRIYERANE 581
            ||||:|..|.|.||.|||.||:||.|:|||:|.|:||..:.          |.:.||:.:||||:
 Worm   532 IDFEIACEEHEKARDLYETLLQRTNHIKVWISMAEFEQTIG----------NFEGARKAFERANQ 586

  Fly   582 MLRQLGDKESRVLLLEAWRDFERDASDSQEMQKVMDKMPRRIKKRQKIVSDNGVEEGWEEVFDYI 646
            .|.. .:||.|::|||||::.|..:.|.:.:::|...||||:|||::|.:::||:.||||.||||
 Worm   587 SLEN-AEKEERLMLLEAWKECETKSGDQEALKRVETMMPRRVKKRRQIQTEDGVDAGWEEYFDYI 650

  Fly   647 FPEDEMARPNLKLLAAAKMWKTQKDNTVDDPPATAIASE---PEPAAD 691
            ||:|:.|:.:.|||.||..||.:::..     |...|.|   |.|..|
 Worm   651 FPQDQAAKGSFKLLEAAARWKREREEA-----AARAAQELDAPIPEGD 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crnNP_477118.1 HAT 94..122 CDD:214642 18/27 (67%)
TPR repeat 109..139 CDD:276809 18/29 (62%)
TPR repeat 144..172 CDD:276809 19/27 (70%)
RNA14 <180..539 CDD:227438 238/363 (66%)
HAT 191..222 CDD:111114 20/31 (65%)
TPR repeat 473..503 CDD:276809 20/29 (69%)
TPR repeat 508..538 CDD:276809 22/29 (76%)
syf-3NP_001122979.1 Suf 89..>216 CDD:283497 89/126 (71%)
TPR repeat 89..114 CDD:276809 17/24 (71%)
HAT 100..132 CDD:214642 21/31 (68%)
TPR repeat 119..149 CDD:276809 18/29 (62%)
TPR repeat 154..182 CDD:276809 19/27 (70%)
HAT 201..233 CDD:111114 20/31 (65%)
HAT 469..499 CDD:214642 21/29 (72%)
TPR repeat 489..517 CDD:276809 19/27 (70%)
TPR repeat 522..553 CDD:276809 23/30 (77%)
TPR repeat 558..584 CDD:276809 11/35 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160156579
Domainoid 1 1.000 562 1.000 Domainoid score I115
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6462
Inparanoid 1 1.050 893 1.000 Inparanoid score I196
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54523
OrthoDB 1 1.010 - - D147873at33208
OrthoFinder 1 1.000 - - FOG0003119
OrthoInspector 1 1.000 - - oto20093
orthoMCL 1 0.900 - - OOG6_101977
Panther 1 1.100 - - LDO PTHR11246
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R208
SonicParanoid 1 1.000 - - X2089
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.940

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