DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vinc and vcla

DIOPT Version :9

Sequence 1:NP_001284813.1 Gene:Vinc / 31201 FlyBaseID:FBgn0004397 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_001122153.1 Gene:vcla / 552980 ZFINID:ZDB-GENE-050506-61 Length:1131 Species:Danio rerio


Alignment Length:1145 Identity:468/1145 - (40%)
Similarity:641/1145 - (55%) Gaps:199/1145 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPVFHTKTIESILDPVAQQVSRLVILHEEAE-DGNAMPDLSRPVQVVSAAVANLVKVGRDTINSS 64
            |||||||||||||:|||||:|.|||:|||.| ||.|:|||:.||..|.|||:|||:||::|:.::
Zfish     1 MPVFHTKTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTSPVAAVQAAVSNLVRVGKETVQTT 65

  Fly    65 DDKILRQDMPSALHRVEGASQLLEEASDMLRSDPYSGPARKKLIEGSRGILQGTSSLLLCFDESE 129
            :|||:::|||||..:||.|...|.||:.|||:||||.|||..||:||||||.|||.|||.|||:|
Zfish    66 EDKIMKRDMPSAFIKVENACAKLVEAAQMLRTDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAE 130

  Fly   130 VRKIIQECKRVLDYLAVAEVINTMEQLVQFLKDLSPCLSKVHREVGAREKELTHQVHSEILVRCL 194
            |||||:.||.:|:||.||||:.|||.|:.:.|:|.|.::|:.:.:..|::|||||.|..:||..:
Zfish   131 VRKIIRVCKGILEYLTVAEVVETMEDLITYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVTSM 195

  Fly   195 EQVKTLAPILICSMKVYIHIVEQQGRGAEEAAENRNYLAARMSDELQEIIRVLQLTTYDEDT-SE 258
            ..||.|.|:||.::|:::.....:..|.|||.:||||...:|:.|:.|||||||||::|||. :.
Zfish   196 NTVKELLPVLISAIKIFVTTKCTKSHGVEEALKNRNYTFDKMTAEINEIIRVLQLTSWDEDAWAN 260

  Fly   259 LDNLTVLKKLSNAISNKMEQANEWLSNPYALRGGVGEKALRQVIDNATEISERCL---------- 313
            ..:...:|:....|.:||.||..||.:|.||.|..||.||||::|.|.::.|.|.          
Zfish   261 KKDTEAMKRALALIESKMGQAKGWLRDPNALPGDPGEHALRQILDEAGKVGELCAGKERREILGT 325

  Fly   314 ----------------------------------------------------------------- 313
                                                                             
Zfish   326 AKTLGQMTDQVSDVRARGQGATPMGMQKAQQVAQGLDILVGKVENAARKLEALTNAKQAIAKRID 390

  Fly   314 ------------PQDSYPIR-------KLAD----------------EVTAMANTLCELRQEGKG 343
                        |:....||       ::||                |:..:...|.|||:.|||
Zfish   391 NAQSWLADPNGGPEGEENIRALLAEAKRIADLCEDPKERDDILRSIGEIAGLTARLVELRRIGKG 455

  Fly   344 QSPQAESLVRGIRDRMGELKSLVHQAVLGVDKAGVQQTAHTIQGRLEQAVKWLQHPEINDGGLGE 408
            .:|:|.:|.:.|...:..|::..::||..:..|   :.|.|::|::|||::|:.:|.::|.|:|:
Zfish   456 DTPEARALAKQIGTALQNLQAKTNRAVANMRPA---KAAVTLEGKMEQALRWINNPGVDDHGVGQ 517

  Fly   409 RAINLIVEEGRKVAEGCPGHQKAEIQQLCDEVERLKRQAA-------GSGPAAKQAAKQLTQKLY 466
            .||..::.|||::|...||..:.|:...|::||:|..|.|       |..|.|:..|..|.:.:.
Zfish   518 AAIRGLIAEGRRLASSLPGPYRQELLAKCEQVEQLMMQLADLAARGEGESPQARAVAAHLLEAIK 582

  Fly   467 ELKAAIQNALVNRIVQDFMDVSTPLKQFTEAVLQPEGTPGREQNFNQKSNNLQAFSDRASKTSRM 531
            :|||.:|.|:...:...|.|.:||:|....|...|...|.||:.|.::::|.:..:.|...|:..
Zfish   583 DLKAKMQEAMTQEVSDVFSDTTTPIKLLAVAATAPLEAPNREEVFEERASNFENHASRLGATAEK 647

  Fly   532 VAAGGACGNKKIAEILLSSAAQVDSLTPQLISAGRIRMNYPGSKAADEHLQNLKQQYADTVLRMR 596
            .||.|. .||...|.:.::......||||:.||.||.:..||::||.||...:|.|:.|.:.:|.
Zfish   648 AAAVGT-ANKSTVEGIQAAVKSARDLTPQVTSAARILLKNPGNQAAYEHFDTMKNQWIDNIEKMT 711

  Fly   597 TLCDQATDPADFIKTSEEHMQVYAKLCEDAIHARQPQKMVDNTSNIARLINRVLLVAKQEADNSE 661
            :|.|:|.|....:..|||.::.....|..|:...|||.:|...::|||..||||||||:|.:|||
Zfish   712 SLVDEAIDTKSLLDASEEAIKKDIDKCRVAMANVQPQMLVAGATSIARRANRVLLVAKREVENSE 776

  Fly   662 DPVFTERLNAAANRLERSLPAMVGDAKLVATNIADPAAAAAWKNSFQRLLGDVREVRDAIAPPQP 726
            ||.|.|.:.||::.|.|::..||..||.||.||.||.....:.:|..|:|..|.:||:|..|.: 
Zfish   777 DPKFRELVKAASDELGRTISPMVMAAKGVAGNIQDPGLQKGFLDSGYRILAAVGKVREAFQPQE- 840

  Fly   727 PPLPTSLPPPIPELSALHLSNQNAERAPPRPPLPREGLAPVRPPPPETDDE-------------- 777
                ...|||.|:|..||:   |.::|||:||||...:.|.||||||..||              
Zfish   841 ----LDFPPPPPDLDQLHV---NDDQAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEMVSEP 898

  Fly   778 ----------------------DEG----------------------------VFRTMPHANQPI 792
                                  |||                            :..:....||||
Zfish   899 MMVAARSLHDEARKWSSKPEVPDEGFEAAEAEVDIDDEDEFTDNEDDYEPELLLMSSNQPVNQPI 963

  Fly   793 LIAARGLHQEVRQWSSKDNEIIAAAKRMAILMARLSELVLSDSRGSKRELIATAKKIAEASEDVT 857
            |.||:.||||.|:||||.|:||.||||||:|||.:|.||...| |:||.||..||.||:||::||
Zfish   964 LAAAQSLHQEARKWSSKGNDIIGAAKRMALLMAEMSRLVRGGS-GNKRALIQCAKDIAKASDEVT 1027

  Fly   858 RLAKELARQCTDRRIRTNLLQVCERIPTIGTQLKILSTVKATMLGAQ--GSDEDREATEMLVGNA 920
            |||||:|:||||:||||||||||||||||.|||||||||||||||..  ..:|..:||||||.||
Zfish  1028 RLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISEEESEQATEMLVHNA 1092

  Fly   921 QNLMQSVKETVRAAEGASIKIRSDQTSNRLQWVRRQPWYQ 960
            ||||||||||||.||.||||||:| ....|:|||:.||||
Zfish  1093 QNLMQSVKETVREAEAASIKIRTD-AGFTLRWVRKTPWYQ 1131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VincNP_001284813.1 Vinculin 63..960 CDD:279395 422/1080 (39%)
vclaNP_001122153.1 Vinculin 66..1131 CDD:279395 422/1078 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593570
Domainoid 1 1.000 488 1.000 Domainoid score I371
eggNOG 1 0.900 - - E1_KOG3681
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 537 1.000 Inparanoid score I1158
OMA 1 1.010 - - QHG51903
OrthoDB 1 1.010 - - D141915at33208
OrthoFinder 1 1.000 - - FOG0005827
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106307
Panther 1 1.100 - - LDO PTHR46180
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4095
SonicParanoid 1 1.000 - - X4806
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.800

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