DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vinc and alpha-Catr

DIOPT Version :9

Sequence 1:NP_001284813.1 Gene:Vinc / 31201 FlyBaseID:FBgn0004397 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_726389.4 Gene:alpha-Catr / 49713 FlyBaseID:FBgn0029105 Length:810 Species:Drosophila melanogaster


Alignment Length:1028 Identity:159/1028 - (15%)
Similarity:312/1028 - (30%) Gaps:432/1028 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 VVSAAVANLVKVGRDTINSSDDKILRQDMPSALHRVEGASQLLEEASDMLRSDPYSGPARKKLIE 109
            :::.||...:.:|.  |.:.::..::.||..|......|.:.:|...|:   .|.||...:..||
  Fly    34 LLNIAVERFITIGE--IIAEENIDIKGDMYEAAKEARDAGKSIERLCDI---SPLSGMELRHHIE 93

  Fly   110 ----------GSRGILQGTSSLLLCFDESEVRKIIQECKRVLDYLAVAEVINTMEQLVQFLKDLS 164
                      .:|.:|...:.:||..|...|:|::...||..:.|   |.:.::....:|::..|
  Fly    94 PLKDYGAIILAARSLLSSVTRILLLVDIIVVKKLLTAKKRASESL---EKLESVMNFTEFVRAFS 155

  Fly   165 ---------PCLSKVHREVGAREKELTHQVHSEILVRCLEQVKTLAPILICSMKVYIH---IVEQ 217
                     ..|:..||.....|:.......:..::.     |::|.:|..|....||   ::.:
  Fly   156 VFGTEMIELAYLTGHHRNSFKEERRRAQMFSARQILE-----KSIAILLTSSKNSLIHSDCVIVK 215

  Fly   218 QGRGA-----------------------------EEAAENRNYLAARMSDELQEIIRVL-----Q 248
            :.|..                             |:.|.|.||....:...::.|:.::     |
  Fly   216 ENRDTVFCQIRRAMDLIHFVVKDSIFDTAKHMPFEKQASNPNYENESIYTTIKRIVNLIKRYKYQ 280

  Fly   249 LTTY-----------------DED--TSE-----------------------LDNLTVLKKLSNA 271
            ::.|                 |:|  .||                       .::|.:.::||.|
  Fly   281 MSYYEGSGEGNNNSDAYFSFLDDDLWKSEKNLPSAAGGGRMVNNTNFRKHLSSESLDLREELSLA 345

  Fly   272 ISNKMEQANEWLSNPYALRGGVGEKALRQVIDNATEISERCLPQDSYPIRKLADEVTAMANTLCE 336
            .....|:|:::..:||....  ..|.:....||.                ||  |.....||:.:
  Fly   346 FEKLFEKAHDFTDSPYISHN--HRKNILSYCDNC----------------KL--EFDLYLNTIMK 390

  Fly   337 LRQEGKGQSPQAESLVRGIRDRMGELKSLVHQAVLGVDKAGVQQTAHTIQGRLEQAVKWLQHPEI 401
            .:.||.|.:.                         ||...|..|    ::||.:        ||:
  Fly   391 DQHEGGGGAG-------------------------GVGGVGGGQ----VKGRSD--------PEL 418

  Fly   402 NDGGLGERAINLIVEEGRKVAEGCPGHQKAEIQQLCDEVERLKRQAAGSGPAAKQAAKQLTQKLY 466
            .                          ..:.:::||                 ||....::.::.
  Fly   419 G--------------------------MLSSLEELC-----------------KQLVVSVSSQIE 440

  Fly   467 ELKAAIQNALVNRIVQDFMDVSTPLKQFTEAVLQPEGTPGREQNFNQKSNNLQAFSDRASKTSRM 531
            :...:::  :.:::|:.|..::|...               ..|.||:|:.   |.|        
  Fly   441 DFNESLK--ICSKLVKSFHVLATNYD---------------IDNLNQRSSK---FHD-------- 477

  Fly   532 VAAGGACGN-----KKIAEILLSSAAQVDS---------LTPQLISAGRIRMNYPGSKAADEHLQ 582
                 .|.:     |.:..|..:...||.:         ..||:..|.:|...|..|.||:|:.:
  Fly   478 -----CCDHIFDICKLLQHIAPTERLQVQAKCLAINLRIYGPQVFIAAKILWKYSNSSAANENFE 537

  Fly   583 NLKQQYADTVLRMRTLCDQATDPADFIKTSEEHMQVYAKLCEDAIHARQPQKMVDNTSNIARLIN 647
            :....:                                             |.:  |:.|:.:..
  Fly   538 SFSDMW---------------------------------------------KWL--TNEISMIAK 555

  Fly   648 RVLL-VAKQEADNSEDPVFTERLNAAANRLERSLPAMVGDAKLVATNIADPAAAAAWKNSFQRLL 711
            ::|: :...:.|...|   .|:..:::::|.:|......|.::|                     
  Fly   556 KILVSINTTKGDRDAD---AEKCESSSDKLTKSGVPATEDGEMV--------------------- 596

  Fly   712 GDVREVRDAIAPPQPPPLPTSLPPPIPELSALHLSNQNAERAPPRPPLPREGLAPVRPPPPETDD 776
                                       |.|.|...|..                           
  Fly   597 ---------------------------EYSGLEGKNNG--------------------------- 607

  Fly   777 EDEGVFRTMPHANQPILIAARGLHQEVRQWS---SKDNEIIAAAKR---MAILMARLSELVLSDS 835
             |...:::                    :||   |.||:|:..||.   ||.||.:.::     .
  Fly   608 -DLNTYQS--------------------KWSEDLSDDNDILKRAKNMSAMAFLMYQFTK-----G 646

  Fly   836 RGSKR---ELIATAKKIAEASEDVTRLAKELARQCTDRRIRTNLLQVCERIPTIGTQLKILSTVK 897
            .||.|   :|...|:..||.:..:.::.:..:.|......:.:||.:.:|:||....|:.  |||
  Fly   647 NGSLRTTQDLFTQAEYFAEEANRLYKVLRHFSYQVPASDNKKDLLNILDRVPTFVQALQF--TVK 709

  Fly   898 ATMLGAQGSDEDREAT----EMLVGNAQNLMQSVKETVRAAEGASIKIRSDQT 946
            ...:|       :.||    :.::...:|||..:.:.|......:.|.:.:.|
  Fly   710 DHTVG-------KAATFVKVDHVIRETKNLMNVINKVVSKCFECATKYKLNLT 755

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VincNP_001284813.1 Vinculin 63..960 CDD:279395 155/1010 (15%)
alpha-CatrNP_726389.4 Vinculin 52..755 CDD:279395 154/1006 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467067
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3681
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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