DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vinc and alpha-Cat

DIOPT Version :9

Sequence 1:NP_001284813.1 Gene:Vinc / 31201 FlyBaseID:FBgn0004397 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_524219.1 Gene:alpha-Cat / 40517 FlyBaseID:FBgn0010215 Length:917 Species:Drosophila melanogaster


Alignment Length:991 Identity:217/991 - (21%)
Similarity:387/991 - (39%) Gaps:184/991 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 TKTIESILDPVAQQVSRLVILH--EEAEDGNAMPDLSRPVQVVSAAVANLVKVGRDTINSSDDKI 68
            |.::|..|:|:..||:.||...  .:.:.|.: ...|..|..|..|..|.::.|......:.|  
  Fly    29 TMSVEKTLEPLVLQVTTLVNTKGPSKKKKGKS-KRASALVAAVEKATENFIQKGEQIAYENPD-- 90

  Fly    69 LRQDMPSALHRVEGASQLLEEASDMLRSDPYSGPARKKLIEGSRGILQGTSSLLLCFDESEVRKI 133
            :.|:|.:|:..|:.....:..|:.....||.|...|..::..:|.:|...:.||:..|..:|..:
  Fly    91 ITQEMLTAVDEVKKTGDAMSIAAREFSEDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLL 155

  Fly   134 IQECKRVLDYLAVAEVINTMEQLVQFLKDLSPCLSKVHREVGAREKELTHQVHSEILVRCLEQVK 198
            ::....|.|.|...:..::.::|:..::.......::.::...|::||......:.|......:|
  Fly   156 LKSLHIVEDDLNKLKNASSQDELMDNMRQFGRNAGELIKQAAKRQQELKDPQLRDDLAAARAMLK 220

  Fly   199 TLAPILICSMKVYIHIVEQQGRGAEEAAENRNYLAARMSDELQEIIRVLQLTTYDEDTSELDNLT 263
            ..:.:|:.:.|||:...|     .:.|..||::                                
  Fly   221 KHSTMLLTASKVYVRHPE-----LDLAKVNRDF-------------------------------- 248

  Fly   264 VLKKLSNAISNKMEQANEWLSNPYALRGGVGEKALRQ-------VIDNATEISERCLPQDSYPIR 321
            :||::.:|::...:.|....|.|..:..|.||.|...       |:|..|...:|.        |
  Fly   249 ILKQVCDAVNTISDVAQGKSSQPTDIYSGAGELAAALDDFDEGIVMDPMTYSEKRS--------R 305

  Fly   322 KLADEVTAMANTLCELRQEGKGQSPQAESLVRGIRDRMGELKSLVHQAVLGVDKAGVQQTAHTIQ 386
            :|.:|                                  .|:|::..|.|..|.           
  Fly   306 QLLEE----------------------------------RLESIISAAALMADA----------- 325

  Fly   387 GRLEQAVKWLQHPEINDGGLGERAINLIVEEGRKVAEGCPGHQKAEIQQLCDEVERLKRQAAGSG 451
                            |....||...::.|        |...::| :|.|..|......|...| 
  Fly   326 ----------------DCTRDERRERIVAE--------CNAVRQA-LQDLLSEYMSNMSQKDNS- 364

  Fly   452 PAAKQAAKQLTQKLYELKAAIQNALVNRIVQDFMDVSTPLKQFTEAVLQPEGTPGREQNFNQKSN 516
            |...:|..|:.:|..:|:..::.|:|:.:...|::.:|||....||     ...|.|:...:||.
  Fly   365 PGLSRAIDQMCRKTRDLRRQLRKAVVDHVSDSFLETTTPLLDLIEA-----AKSGNEKKVREKSE 424

  Fly   517 NLQAFSDRASKTSRMVAAGGACGNKKIAEILLSSAAQVDSLTPQLISAGRIRMNYPGSKAADEHL 581
            .....:::..:.:.:|.:  ...|:...:::..:|||::||.||:|:|..|....|.||.|.|::
  Fly   425 IFTKHAEKLVEVANLVCS--MSNNEDGVKMVRYAAAQIESLCPQVINAASILTVRPNSKVAQENM 487

  Fly   582 QNLKQQYADTVLRMRTLCDQATDPADFIKTSEEHMQVYAKLCEDAIHARQPQKMVDNTSNIARLI 646
            ...:|.:...|..:....|..|...||:..||.|:......|..|:.....:.:......|....
  Fly   488 TTYRQAWEVQVRILTEAVDDITTIDDFLAVSENHILEDVNKCVMALQVGDARDLRATAGAIQGRS 552

  Fly   647 NRVLLVAKQEADNSEDPVFTERLNAAAN--------RLERSLPAMVGDAKLVATNIADPAAAAAW 703
            :||..|.:.|.||.|..::|:|:..|..        :.::.:.|.||.....:....|       
  Fly   553 SRVCNVVEAEMDNYEPCIYTKRVLEAVKVLRDQVMMKFDQRVGAAVGALSNNSNKDVD------- 610

  Fly   704 KNSF---QRLLGD-VREVRDAIAPPQ-PPPLPTSLP-PPIPEL-------SALHLSNQNAERAPP 755
            :|.|   .||:.| |||:|.|:...: ...|.|... .|:.:|       |:.|..:|..:..| 
  Fly   611 ENDFIDASRLVYDGVREIRRAVLMNRSSEDLDTDTEFEPVEDLTLETRSRSSAHTGDQTVDEYP- 674

  Fly   756 RPPLPREGLAPVRPPPPETDDEDEGVFRTMPHANQPILIAARGL--HQEVRQWSSKDNEIIAAAK 818
                ...|:...|....:..:||:     ...|.|..|.....|  ..||.:|....|:||..||
  Fly   675 ----DISGICTAREAMRKMTEEDK-----QKIAQQVELFRREKLTFDSEVAKWDDTGNDIIFLAK 730

  Fly   819 RMAILMARLSELVLSDSRG---SKRELIATAKKIAEASEDVTRLAKELARQCTDRRIRTNLLQVC 880
            .|.::|..:::  .:..||   :..::|..||||:||...:.:|.:|:|.||.:...:.:||...
  Fly   731 HMCMIMMEMTD--FTRGRGPLKTTMDVINAAKKISEAGTKLDKLTREIAEQCPESSTKKDLLAYL 793

  Fly   881 ERIPTIGTQLKILSTVKATMLGAQGS--DEDREATEMLVGNAQNLMQSVKETVRAAEGASIKIRS 943
            :||.....|::|.|.|||.:....|.  ....::...|:..|:|||.:|..||:.:..||.|...
  Fly   794 QRIALYCHQIQITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKYSYVASTKYTR 858

  Fly   944 DQT--SNRLQWVRRQP 957
            ..|  |..:.|..:.|
  Fly   859 QGTVSSPIVVWKMKAP 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VincNP_001284813.1 Vinculin 63..960 CDD:279395 202/932 (22%)
alpha-CatNP_524219.1 Vinculin 87..877 CDD:395830 202/932 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467066
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3681
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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