DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vinc and Ctnna3

DIOPT Version :9

Sequence 1:NP_001284813.1 Gene:Vinc / 31201 FlyBaseID:FBgn0004397 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_001157848.1 Gene:Ctnna3 / 216033 MGIID:2661445 Length:895 Species:Mus musculus


Alignment Length:1014 Identity:201/1014 - (19%)
Similarity:385/1014 - (37%) Gaps:267/1014 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 TKTIESILDPVAQQVSRLVILHEEAEDGNAMPDLSRPVQVVSAAVA----NLVKVGRDTINSSDD 66
            |.|:|.:|:|:..||:.||...:  ...|.....|:..:|:.|:|.    ||:..|.  :.:.:.
Mouse    20 TFTVEKLLEPLIIQVTTLVNCPQ--NPSNRKKGRSKRARVLLASVEEATWNLLDKGE--MIAKEA 80

  Fly    67 KILRQDMPSALHRVEGASQLLEEASDMLRSDPYSGPARKKLIEGSRGILQGTSSLLLCFDESEVR 131
            .:|::::.:||..|...|:.|:.:::....||...|.|:.:::.:|.:|...:.||:..|     
Mouse    81 TVLKEELAAALQEVRKESKALKVSAERFTDDPCYLPKREAVVQAARALLAAVTRLLVLAD----- 140

  Fly   132 KIIQECKRVLDYLAVAEVINTMEQLVQFLKDLS--PCLSKVHREVG-----------AREKELTH 183
                    ::|.:.:.:.:::.::..:.||::|  ..|.:.::::|           .|:::|..
Mouse   141 --------MIDVMCLLQHVSSFQRTFESLKNVSNKSDLQRTYQKLGKELESLDYLAFKRQQDLKS 197

  Fly   184 QVHSEILVRCLEQVKTLAPIL--ICSMKVYIHIVEQQGRGAEEAAENRNYLAARMSDELQEIIRV 246
            ....:.:......:|..:|:|  |||.     .:|.....:.:|:::      .:.:|:|..:.|
Mouse   198 PSQRDEIAGARATLKENSPLLHSICSA-----CLEHSDVASLKASKD------TVCEEIQNALDV 251

  Fly   247 L----------------QLTTYDEDTSELDNLTVLKKLSNAISNKMEQANEWLSNPYALRGGVGE 295
            :                |..|......||:||.||    |.::...|.....|           |
Mouse   252 ISNASQGIQNAPAPPEPQAATLGSAFDELENLIVL----NPLTVTEEDVRPSL-----------E 301

  Fly   296 KALRQVIDNATEISERCLPQDSYPIRKLADEVTAMANTLCELRQEGKGQSPQAESLVRGIRDRMG 360
            |.|..:|..|..:::....:|.:..|.:|:         |                         
Mouse   302 KRLEAIISGAALLADSSCTRDLHRERIIAE---------C------------------------- 332

  Fly   361 ELKSLVHQAVLGVDKAGVQQTAHTIQGRLEQAVKWLQHPEINDGGLGERAINLIVEEGRKVAEGC 425
                                      ..:.||::.|....:::.|..||:..|            
Mouse   333 --------------------------NAIRQALQDLLTEYMSNTGKTERSNTL------------ 359

  Fly   426 PGHQKAEIQQLCDEVERLKRQAAGSGPAAKQAAKQLTQKLYELKAAIQNALVNRIVQDFMDVSTP 490
                                         ..|...:::|..:|:..::.|:::.|...|:|.:.|
Mouse   360 -----------------------------NTAIVNMSKKTRDLRRQLRKAIIDHISDSFLDTTVP 395

  Fly   491 LKQFTEAVLQPEGTPGREQNFNQKSNNLQAFSDRAS----KTSRMV-AAGGACG---NKKIAEIL 547
            |....||.               |:..::...|.|:    .|.|:| .|..||.   |:...:|:
Mouse   396 LLVLIEAA---------------KNGRVKEIKDYAAIFHEHTGRLVEVANLACSMSTNEDGIKIV 445

  Fly   548 LSSAAQVDSLTPQLISAGRIRMNYPGSKAADEHLQNLKQQYADTVLRMRTLCDQATDPADFIKTS 612
            ..:|..:::|.||:|:|.....:.|.|:.....::..|:.:...:..:....|..|...||:..|
Mouse   446 RIAANHLETLCPQIINAALALASRPKSQVVKNTMEMYKRTWEHYIHVLTEAVDDITSIDDFLAVS 510

  Fly   613 EEHMQVYAKLCEDAIHARQPQKMVDNTSNIARLIN----RVLLVAKQEADNSEDPVFTERLNAAA 673
            |.|:......|..|:..:.    .||....|..|.    ||..:...|.|:.|...:||.:....
Mouse   511 ESHILEDVNKCIIALRDQD----ADNLDRAAGAIRGRAARVAHIVAGEMDSYEPGAYTEGVMRNV 571

  Fly   674 NRLERS-LPAMVGDAKLVATNIADPAAAAAWKNSF----QRLLGDVREVRDAIAPPQPPPLPTSL 733
            |.|..: :|..|....:....::..:..|...|.|    :::...:.::|.::       :....
Mouse   572 NFLTSTVIPEFVTQVNVALDALSKNSLTALDDNQFVDISKKIYDTIHDIRCSV-------MMIRT 629

  Fly   734 PPPIPELSAL--------HLSNQ---NAERA--PPRPPLPREGLAPVRPPPPETDDEDEGVFRTM 785
            |..:.::|.|        |.|.|   ..:||  ...|...:|.:|           |....|:.:
Mouse   630 PEELEDVSDLEDDHEVRSHTSIQTEGKTDRAKMTQLPEAEKEKIA-----------EQVADFKKV 683

  Fly   786 PHANQPILIAARGLHQEVRQWSSKDNEIIAAAKRMAILMARLSELVLSDSRGS-----KRELIAT 845
            ...          |..|:..|....|:||..||:|.::|..:::.    :||.     ..::|..
Mouse   684 KSK----------LDAEIEIWDDTSNDIIVLAKKMCMIMMEMTDF----TRGKGPLKHTTDVIYA 734

  Fly   846 AKKIAEASEDVTRLAKELARQCTDRRIRTNLLQVCERIPTIGTQLKILSTVKATM--LGAQGSDE 908
            ||.|:|:...:..||:::|.||.|...:.:||...|:|.....||||.|.|||.:  ||.:....
Mouse   735 AKMISESGSRMDVLARQIANQCPDPPCKQDLLAYLEQIKFYSHQLKICSQVKAEIQNLGGELIVS 799

  Fly   909 DREATEMLVGNAQNLMQSVKETVRAAEGASIKIRSDQTS 947
            ..::...|:..|:|||.:|.:||:.:..||.||...|:|
Mouse   800 ALDSVTSLIQAAKNLMNAVVQTVKMSYIASTKIIRIQSS 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VincNP_001284813.1 Vinculin 63..960 CDD:279395 184/953 (19%)
Ctnna3NP_001157848.1 Vinculin 18..856 CDD:366435 201/1014 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 635..660 5/24 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3681
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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