DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vinc and deb-1

DIOPT Version :9

Sequence 1:NP_001284813.1 Gene:Vinc / 31201 FlyBaseID:FBgn0004397 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_001293743.1 Gene:deb-1 / 177482 WormBaseID:WBGene00000942 Length:1090 Species:Caenorhabditis elegans


Alignment Length:1099 Identity:498/1099 - (45%)
Similarity:675/1099 - (61%) Gaps:147/1099 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPVFHTKTIESILDPVAQQ---------------------------------------------- 19
            ||||||||||:||:|||||                                              
 Worm     1 MPVFHTKTIENILEPVAQQLHYVLAMAEKNATSVDEVRHLGTSMPNLDRFASRSALALSRASSRR 65

  Fly    20 ----------------------------------VSRLVILHEEAEDGNAMPDLSRPVQVVSAAV 50
                                              |||||||||||.||||||||:.||.:||.||
 Worm    66 SIPEYITPDTVRHVVNDDDCPVCQLMMPRGKDGCVSRLVILHEEANDGNAMPDLTGPVGMVSRAV 130

  Fly    51 ANLVKVGRDTINSSDDKILRQDMPSALHRVEGASQLLEEASDMLRSDPYSGPARKKLIEGSRGIL 115
            .||::||.||.:.|||:||:||||.||.||||:|:||||:|..|:.||||.|||||||:|:||||
 Worm   131 GNLIQVGYDTCDHSDDRILQQDMPPALQRVEGSSKLLEESSYSLKHDPYSVPARKKLIDGARGIL 195

  Fly   116 QGTSSLLLCFDESEVRKIIQECKRVLDYLAVAEVINTMEQLVQFLKDLSPCLSKVHREVGAREKE 180
            ||||:||||||||||||||:.|::..||:||:|||.:|..|.||:||:||.|..|..:|..|::|
 Worm   196 QGTSALLLCFDESEVRKIIRVCRKANDYVAVSEVIESMADLQQFVKDISPVLHDVTNDVNLRQQE 260

  Fly   181 LTHQVHSEILVRCLEQVKTLAPILICSMKVYIHIVEQQGR-GAEEAAENRNYLAARMSDELQEII 244
            ||||||.|||:||::.:|.:|||||||||..|.:.....| |..||..|||:::.||::|:.|||
 Worm   261 LTHQVHREILIRCMDSIKVIAPILICSMKTSIELGTPHPRQGHAEAIANRNFMSQRMTEEMNEII 325

  Fly   245 RVLQLTTYDEDTSELDNLTVLKKLSNAISNKMEQANEWLSNPYALRGGVGEKALRQVIDNATEIS 309
            |||||||||||..:.||:||::|..:|..:.:..|.:||::|:|..|.|||||:|::.:.|..||
 Worm   326 RVLQLTTYDEDEWDADNVTVMRKALSAAKSLLTAALDWLADPHARSGAVGEKAIRRICEYADRIS 390

  Fly   310 ERCLPQDSYPIRKLADEVTAMANTLCELRQEGKGQSPQAESL----VRGIRDRMGELKS--LVHQ 368
            .|.||:|:..|::...|:|:..:.||.||..|:   |..|:|    .|.::|.:|...|  |:..
 Worm   391 ARALPEDAQSIKRSIFEITSFTDELCNLRNNGQ---PDRENLAAQTARRLKDLVGSQNSSGLMGD 452

  Fly   369 AVLGVDKAGVQQTAHTIQGRLEQAVKWLQHPEINDGGLGERAINLIVEEGRKVAEGCPGHQKAEI 433
            |:....:.|....|||..||||||::||.:|.::|||||.:|:.|:..:.||:|:......:..:
 Worm   453 ALQNAQRHGGANPAHTAAGRLEQALRWLDNPGLDDGGLGLQALRLLTADARKLADRLNPQDRNRL 517

  Fly   434 QQLCDEVER-------LKRQAAGSGPAAKQAAKQLTQKLYELKAAIQNALVNRIVQDFMDVSTPL 491
            ..||.:::|       |:|:..|:.|.|.|...||...|.:|...::..|.:|:|.||.|::|||
 Worm   518 LGLCSDIDRLAAQLADLERRGLGNSPEAHQIRNQLKNALRDLGDFMRRVLTDRVVDDFADITTPL 582

  Fly   492 KQFTEAVLQPEGTPGREQNFNQKSNNLQAFSDRASKTSRMVAAGGACGNKKIAEILLSSAAQVDS 556
            |||.|||......|.|||||..||..|...|...:.|:|:||:.|...:||..|.:|.:|.:|:.
 Worm   583 KQFVEAVHADPYDPNREQNFVDKSQRLTDHSQSMTTTARLVASCGPSKSKKTVEAILDTAEKVEQ 647

  Fly   557 LTPQLISAGRIRMNYPGSKAADEHLQNLKQQYADTVLRMRTLCDQATDPADFIKTSEEHMQVYAK 621
            |||||::|||:|::.|||   ::|.:|:.:||||.:.|:|:..|.|.|..:|::.||..|:.|..
 Worm   648 LTPQLVNAGRVRLHNPGS---EQHFENIHKQYADALHRLRSHVDDAIDTGEFVRASETAMRRYTN 709

  Fly   622 LCEDAIHARQPQKMVDNTSNIARLINRVLLVAKQEADNSEDPVFTERLNAAANRLERSLPAMVGD 686
            .||.||:......:|:|:|.||||.||||:.|:.||||||:|.|..|:..||::|..::|.||.:
 Worm   710 HCEGAINGADAHGLVNNSSQIARLGNRVLMTAQNEADNSEEPSFVSRVRNAADQLHNAIPPMVNN 774

  Fly   687 AKLVATNIADPAAAAAWKNSFQRLLGDVREVRDAI-------------------APPQPPPLPTS 732
            ||.:|.|..|..||..|:.:...||..||.|.|||                   |.|..||.|:|
 Worm   775 AKQIAQNPHDQYAAQNWRGTNDHLLNSVRAVGDAITGVPMSNGRHSSYQESISRASPYNPPPPSS 839

  Fly   733 --------LPPPIPELSALHLSNQNAERAPPRPPLPREGLAPVRPPPPETDDEDEGVFR-----T 784
                    .||..|.:....:..::.. ||||||.|.|...|.|||||...||:|....     .
 Worm   840 QVIRSVNASPPTAPIIHNKMIIREDIP-APPRPPPPVELSPPPRPPPPPEYDEEEETRAFWERYP 903

  Fly   785 MPHA-NQPILIAARGLHQEVRQWSSKDNEIIAAAKRMAILMARLSELVLSDSRGSKRELIATAKK 848
            :|.| :||:|.||..||.|::||||::|:|:||||||||||||||:||..:. |:|::||..:|.
 Worm   904 LPQASHQPMLAAAHNLHNELKQWSSQENDIVAAAKRMAILMARLSQLVRGEG-GTKKDLINCSKA 967

  Fly   849 IAEASEDVTRLAKELARQCTDRRIRTNLLQVCERIPTIGTQLKILSTVKATMLGA---------- 903
            ||::||:|||||.:|||.|||.::||.||||.||||||.||||:||||||||||:          
 Worm   968 IADSSEEVTRLAVQLARLCTDIKMRTALLQVSERIPTIATQLKVLSTVKATMLGSANVIGPYGQP 1032

  Fly   904 -QGSDEDREATEMLVGNAQNLMQSVKETVRAAEGASIKIRSDQTSNRLQWVRRQPWYQY 961
             :||:||.||.:.||.||||||||||:.|||||.||||||:: :..||:|:|:..|..:
 Worm  1033 VEGSEEDDEAMQQLVHNAQNLMQSVKDVVRAAEAASIKIRTN-SGLRLRWLRKPMWSNF 1090

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VincNP_001284813.1 Vinculin 63..960 CDD:279395 450/954 (47%)
deb-1NP_001293743.1 Vinculin 100..1089 CDD:366435 481/997 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165724
Domainoid 1 1.000 844 1.000 Domainoid score I21
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H70886
Inparanoid 1 1.050 852 1.000 Inparanoid score I223
Isobase 1 0.950 - 0 Normalized mean entropy S4383
OMA 1 1.010 - - QHG51903
OrthoDB 1 1.010 - - D141915at33208
OrthoFinder 1 1.000 - - FOG0005827
OrthoInspector 1 1.000 - - oto18476
orthoMCL 1 0.900 - - OOG6_106307
Panther 1 1.100 - - LDO PTHR46180
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4095
SonicParanoid 1 1.000 - - X4806
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.890

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