DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-8 and CG18213

DIOPT Version :10

Sequence 1:NP_001014717.1 Gene:SmydA-8 / 31200 FlyBaseID:FBgn0053548 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_650589.2 Gene:CG18213 / 42055 FlyBaseID:FBgn0038470 Length:879 Species:Drosophila melanogaster


Alignment Length:211 Identity:51/211 - (24%)
Similarity:84/211 - (39%) Gaps:46/211 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 GVFATRDIAAGELIFQERALVTGPTARKGQLSSCICC--HETLPQTGFLCRHR--CTLPVCETC- 127
            ||||:.|:..||::..|..:....:|   ...:|..|  |:....|...||:|  |:    ::| 
  Fly   241 GVFASCDVPKGEIVLVENPVYFQFSA---PFLNCELCGVHQQQLYTCDNCRYRSYCS----KSCM 298

  Fly   128 -SDSEEHQAECEHFRRWQPKDVDAEQ---------EQVNP------MSLRILTAVR------VFH 170
             ||:|.||.||..::......::|..         |.:.|      |...||:..|      :.|
  Fly   299 KSDAEVHQYECYGYKIGLIPMLEANMLFRLFCEAGEYILPAIVDYAMDGGILSNPRDAWTFILEH 363

  Fly   171 LGKEQR--HLVDAMQANA------ERAYRREIIQAAQCFRNFPTTDRVFMDQLFRIVGVLNTNAF 227
            ..:|::  :||..:.|.|      .|....||:..|.....|...|....::.|.::.::.|:..
  Fly   364 AQEEEKTYNLVGELLATAPDYNLLTREKYTEIVTTAFRLSVFIYNDTRLAEKYFYLLALVKTDLI 428

  Fly   228 EAPC----RSGGHETL 239
            ....    |.|||..|
  Fly   429 TVMAAILLRLGGHVLL 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-8NP_001014717.1 SET 58..>88 CDD:394802 8/19 (42%)
SET_SMYD <224..313 CDD:380997 6/20 (30%)
CG18213NP_650589.2 None

Return to query results.
Submit another query.