DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-8 and dao

DIOPT Version :9

Sequence 1:NP_001014717.1 Gene:SmydA-8 / 31200 FlyBaseID:FBgn0053548 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_001260462.1 Gene:dao / 34891 FlyBaseID:FBgn0028862 Length:882 Species:Drosophila melanogaster


Alignment Length:480 Identity:96/480 - (20%)
Similarity:146/480 - (30%) Gaps:160/480 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 DVHLGDLRQEQPNWTISSSTVAGRGVFATRDIAAGELIFQERALVTGPTARKGQLSSCICCHET- 107
            |:.:.|.:..:..|..:||:     :..||.:|...|||:..|:...|:   |....|..|..| 
  Fly   306 DLDINDSKAFEIAWLDNSSS-----LHTTRAVAKNALIFESEAVAMVPS---GNCRVCDYCGITQ 362

  Fly   108 -LPQTGFLCRHRCTLPVCETC--SDSEEHQAEC-------------------------------- 137
             :|.....|.:|..:.....|  ..:..|..||                                
  Fly   363 FIPFPCIYCSNRLVVYCSRQCRFKHAAIHAVECFGHQIELFESFGEVFGMPRLLQLAFRMLITGL 427

  Fly   138 ----EHFRR-------WQPKDVDAEQEQVNPMSLRILTAVRVFHLGKEQRHLVDAMQANAERAYR 191
                .|.|:       |...:...::.|    .:.....:|:..| ||:|. .|.:.|.|..|:.
  Fly   428 PELLGHCRKKPTLSKLWSAINGGLQERQ----DIAYSAVLRLERL-KEERP-TDTVIALALAAHI 486

  Fly   192 REIIQAA------QCFRNFPTTDRVFMDQ--------LFRIVGVLNTNAFEAPCRS--------- 233
            ..|..:.      |..::.||..|:...:        |.|.:|.|...:..| |||         
  Fly   487 LSIYLSKCTTFFDQLEKSLPTASRMSSAEWELLCAALLMRHIGQLRHRSLTA-CRSFVLPADPHV 550

  Fly   234 -----------------GGHETLLRG--------LFPLTA-IMNHECTPNASHYFENGRLAVVRA 272
                             .||..||.|        ::|.|. :..|.|:......| :||.....|
  Fly   551 FSPLNEFQLWAAPMRLQEGHLHLLAGEVAVVSYSVYPDTLNLCRHSCSSTICAKF-SGRTVTALA 614

  Fly   273 ARDIPKGGEITTTYTKILWGNLTRNIFLKMTKHFACDCVRCHDNTENGTYLSALF-------CRE 330
            ..|:|.|..|   |.....||..:....:.||......:|||.|....|:....|       |..
  Fly   615 LLDLPAGSGI---YNCFAGGNFQQLPREERTKQLLESGIRCHCNACQLTHSDDQFHKFHRYRCDN 676

  Fly   331 QGCRGLVIPVQTRTLQPDWRCITCENVFPHAKMAKY---QDFALNTINNRINSCSVQDMIHFINE 392
            ..|..:..|                |..|||...::   :::.....|.       .|:|     
  Fly   677 PNCMEIFTP----------------NALPHAPSLRWWLSEEYTQPEFNG-------ADLI----- 713

  Fly   393 LCPRFCPSSNYVLIEAKLNVIWRMT 417
            :||. |  ..|    .||...|..|
  Fly   714 MCPH-C--GEY----QKLEWFWAFT 731

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-8NP_001014717.1 SET <189..293 CDD:214614 32/152 (21%)
daoNP_001260462.1 TPR_11 165..235 CDD:290150
TPR repeat 200..235 CDD:276809
TPR repeat 243..270 CDD:276809
zf-MYND 355..395 CDD:280009 8/39 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45473066
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.830

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