DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-8 and Smyd4

DIOPT Version :10

Sequence 1:NP_001014717.1 Gene:SmydA-8 / 31200 FlyBaseID:FBgn0053548 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_001099280.1 Gene:Smyd4 / 287525 RGDID:1307369 Length:801 Species:Rattus norvegicus


Alignment Length:585 Identity:111/585 - (18%)
Similarity:182/585 - (31%) Gaps:240/585 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 RDTTPEQLAQLIDVHLGDLRQEQPNWTISSSTVA---------GRGVFATRDIAAGELIFQERAL 87
            ::|.||.....:...|.|:...:.|..||.::::         ||.:.||:||..|||:.:|.|.
  Rat   201 KETLPESFPAALTKALEDMALGEENKQISGASLSVSLCTDPLKGRHLVATKDILPGELLVKEDAF 265

  Fly    88 VTGPTARKGQL----------------SSCICCHETLPQT------------------------- 111
            |:  ....|::                |:.:.||..|..|                         
  Rat   266 VS--VLNPGEMPPLRHCLENKWDTRVTSADLYCHRCLRHTLATVPCGGCSYAKYCSQECVQQAWD 328

  Fly   112 ----------------GFLCRH---RCTL------------PVC------ETC------------ 127
                            |..| |   |.||            .:|      :||            
  Rat   329 HYHSTECSLGGLLLTLGVFC-HVALRMTLLARFEDVDRVIRMICDKTGRKDTCLPESKDLVKTFG 392

  Fly   128 ----SDSEEHQAECE------------------------HFRRWQPKDVDAEQEQVNPMSLRILT 164
                .:|||:...||                        |..:..|:.             :.:.
  Rat   393 YTNQGESEENSETCEPSIPGCNVNGKYENNYDAVLSLLPHTEKHSPEH-------------KFIC 444

  Fly   165 AVRVFHLGKEQRHLVDAMQANAERAYRREIIQAAQCFRNFPTTDRVFMDQLFRIVGV-------- 221
            ||.|..|.::.:......|....::.|.:.:....|      ||       ..:.||        
  Rat   445 AVSVSALCRQLKATSLQAQTTGLKSPRLKAVTPGLC------TD-------LTVWGVAMLQHMLQ 496

  Fly   222 --LNTNAFEAPCRSGGHETLL---------RGLFPLTAIMNHECTPNASHYFENGRLAVVRAARD 275
              .|..|..:.|.:|..|:::         .|:||:.:::||.|:||.|..| ...:|.:|||:.
  Rat   497 LQCNAQAITSICYAGSKESIITNSRQVRLATGVFPVVSLLNHSCSPNTSVSF-TSTVATIRAAQQ 560

  Fly   276 IPKGGEITTTY--TKILWGNLTRNIFLKMTKHFACDCVRCHDNTENGTYLSALFCREQGCRGLVI 338
            |.||.||...|  .:...|...|...|.....|.|.|..||..|     |.|             
  Rat   561 IAKGQEILHCYGPHESRMGVAERQQRLSSQYFFDCSCPACHAET-----LRA------------- 607

  Fly   339 PVQTRTLQPDWRCITCENVFPHAKMAKYQDFALNTINNRINSCSV----QDMIHFINELCPRFCP 399
                 .:.|.|....|                        |:|.|    .|::...||.|     
  Rat   608 -----AVAPRWEAFCC------------------------NTCRVPMQGNDVLSCSNESC----- 638

  Fly   400 SSNYVLIEAKLNVIWRMTRFDHEEYTPEEMGHMDRYREEVLAILHKLGAGE--CTLKKLITGEIQ 462
             :|.|   ::..::.|:.....:.:|.:::...||..:.:..:|....|.|  .:.:..:.|||:
  Rat   639 -TNSV---SRDRLVSRLQDLQQQVHTAQKLLRSDRPEQAIQQLLECQRAAENFLSAEHTVLGEIE 699

  Fly   463  462
              Rat   700  699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-8NP_001014717.1 SET 58..>88 CDD:394802 13/38 (34%)
SET_SMYD <224..313 CDD:380997 30/99 (30%)
Smyd4NP_001099280.1 3a0801s09 7..>211 CDD:273380 3/9 (33%)
TPR repeat 68..96 CDD:276809
TPR repeat 101..136 CDD:276809
SET 239..>269 CDD:394802 12/31 (39%)
zf-MYND 296..335 CDD:460312 4/38 (11%)
SET_SMYD4 418..600 CDD:380934 44/208 (21%)
TPR_12 661..728 CDD:315987 8/39 (21%)
Blue background indicates that the domain is not in the aligned region.

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