DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-8 and set-14

DIOPT Version :10

Sequence 1:NP_001014717.1 Gene:SmydA-8 / 31200 FlyBaseID:FBgn0053548 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_496323.1 Gene:set-14 / 174662 WormBaseID:WBGene00011068 Length:429 Species:Caenorhabditis elegans


Alignment Length:370 Identity:72/370 - (19%)
Similarity:110/370 - (29%) Gaps:122/370 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 QLSSCICCHETLPQTGFLCRHRCTLPVCETCSDSEEHQAECEHFRRWQPKDVDAEQEQVNPMSLR 161
            :|..|..|....     .|...|..      :|.:.|:.||        |.:....|..|. |:|
 Worm    35 ELKKCSACRRLA-----YCSQECQR------ADWKLHKVEC--------KAIKTHNEVAND-SIR 79

  Fly   162 ILTAVRVFHLGKEQR----------------------HLVDAMQANAERAYRREIIQAAQCFRNF 204
            ::..:    .||..|                      |...:..|: |.::.:|..|    |...
 Worm    80 LVMRI----AGKLSRNEDGEIEAYYIPGVARNFQNLEHHPSSYDAD-EESFVKEYFQ----FAIA 135

  Fly   205 PTTDRVFMDQLFRIVGVLNTNAFEAPCRSGGHETLLRGLFPLTAIMNHECTPNASHYFENGRLAV 269
            |..||..:..:|:.|.:   |:|.....:|  ..:..||....:..||.|.|.....:.|     
 Worm   136 PHPDRDLIKLIFQKVSI---NSFVVGNSTG--NPIGVGLCIKLSAANHSCKPLTRVCYRN----- 190

  Fly   270 VRAARDIPKGGEITTT-------YTKILWGNLTRNIFLKMTKHFACDCVRCHDNTENGTYLSALF 327
             |.|..:|...|:.:|       |...|.....|...||....|.|.|..|.|...|..      
 Worm   191 -RTAMLVPVSSELPSTLEGACHSYIDELMPRDMRRDTLKKKYKFLCQCDGCLDEDRNAR------ 248

  Fly   328 CREQGCRGLVIPVQTRTLQPDWRCITCENVFPHAKMAKYQDFALNTINNRINSCS-VQDMIHFIN 391
                              ...|.|..|           .:.:..|..|.:...|. .....||  
 Worm   249 ------------------MEAWTCGIC-----------VKGWMRNKENGQCELCGWTMSKDHF-- 282

  Fly   392 ELC---------PRFCPSSNYVLIEAKLNV------IWRMTRFDH 421
            |||         .|...:::.:.:|.|.|:      :::.|..||
 Worm   283 ELCRTAEEAGIAARSRLANDAIPLETKRNLCEKLLDLFQDTLHDH 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-8NP_001014717.1 SET 58..>88 CDD:394802
SET_SMYD <224..313 CDD:380997 23/95 (24%)
set-14NP_496323.1 zf-MYND 26..64 CDD:460312 7/39 (18%)
SET 75..241 CDD:394802 40/186 (22%)
Blue background indicates that the domain is not in the aligned region.

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