DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-8 and Smyd1

DIOPT Version :10

Sequence 1:NP_001014717.1 Gene:SmydA-8 / 31200 FlyBaseID:FBgn0053548 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_001153599.1 Gene:Smyd1 / 12180 MGIID:104790 Length:490 Species:Mus musculus


Alignment Length:729 Identity:138/729 - (18%)
Similarity:217/729 - (29%) Gaps:281/729 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EDPSLVDAEESMEEGSVTQDATEETEEEEEQEQGDEAGPSERKRSSRKKGGKGGKKGSKKSAAAA 69
            ::||||:.:.|           :||:..:.|.:  |:.||:.|.||.:.|               
Mouse   448 DEPSLVNGQTS-----------DETDTAKPQSK--ESSPSDSKSSSGEDG--------------- 484

  Fly    70 SKVEIPDPYNSTSEEVCAAIGLTDVEFDYDEEEFQGISNLKTFSSIIKPQILEANPGTNVSKMYP 134
                                                 ||||..||.:...  :|.|...|.|.  
Mouse   485 -------------------------------------SNLKERSSSLSDP--DAQPWIQVEKR-- 508

  Fly   135 MFQVKYKEYQDHMAAQGKPVQKQARGSKTPAVSTPVIPPRSA----------PTKTRSARRKRRD 189
                       |....||..........:|..|.|..||.|.          |:..|:...:...
Mouse   509 -----------HRNTSGKNKTSVTPLPPSPPSSPPPPPPPSPPPPIPRLEFFPSAERTELVQSTP 562

  Fly   190 SDAPDSDQEFEAFI--KQQEQL-----------EDDLVKDKEDAR-------IKRAAEREEKKKG 234
            ...|::|||...|:  ::.|||           .||...|:.|.|       :.:......|..|
Mouse   563 KPQPEADQEELDFLFDEEMEQLAAPRKNTFTDWSDDDSDDELDDRDVNKILIVTQTPPHLRKHPG 627

  Fly   235 ALEAARAAKKAKLEKGEEAENND---YCEE---CKQDGELLLCDTCPRAYHTVCIDENMEEPPEG 293
            .........:||:........||   |.|:   .|::|                       ||| 
Mouse   628 GDRTGNHVSRAKITADLAKAINDGLFYYEQDLWTKEEG-----------------------PPE- 668

  Fly   294 DWSCAHCIEHGPEVVKEEPAKQNDEFCKICKETENLLLCDSCVCSFHAYCIDPPLTEVPKEETWS 358
               ||:             ||:.:.|.|:     |::..|    .|..  :.|.|...|.:|...
Mouse   669 ---CAN-------------AKEMENFKKL-----NMISQD----EFET--LTPKLPIDPNQEVPP 706

  Fly   359 CPRCET--VKPEHKIEKILCWRWKEIPYPE--------PLEAGKE-----------ASSDDAML- 401
            .|.|:|  ....|.:.       .::|...        |...|::           ...|...| 
Mouse   707 PPPCQTDDSSMAHSLP-------ADVPESSSVPRTPRTPRTPGRQDPTKTPRFYPVIKEDSGNLD 764

  Fly   402 -KPPRKMEPRREREFFVKWKYLSYWQCSWVSEMLLEVHFRMLILLYWRKNDSDAPPEFEESVTSR 465
             |.|||.:.|..                  |...||.|      :.|..:..:..|. ..|::|.
Mouse   765 GKTPRKRKTRHS------------------SNPPLECH------VGWVMDSREHRPR-TSSISSS 804

  Fly   466 HHSDNDPYKLRERFYQYGIKPE-----WMQIHRII-----NHQSYAKSQQDYLVKWKELSYDQAT 520
            :.|.::.......  .||..|:     |...|.::     ..|.|.|.::..|.:.|.|...|:.
Mouse   805 NASPSEGAPALSG--SYGCTPQSLPKFWHPSHELLRENGFTQQVYHKYRRRCLNERKRLGVGQSQ 867

  Fly   521 --------WE---RDDSNIANYE------------------EAIIKYWQH-RESKLNEDIPKNVQ 555
                    |.   ||:.|...||                  |.:.:::.: .|.:...||.|:.|
Mouse   868 EMNTLFRFWSFFLRDNFNRKMYEEFRQFAVEDSKENYRYGLECLFRFYSYGLERRFRPDIFKDFQ 932

  Fly   556 KMIAKHREAKGLPPKED-----EKKKKKREKIDIR-----KKYEVQPDYVTETGGKLHPYQLEGL 610
            :...:..|...|...|.     :..|.|.:.||.:     .|::...|:..|.     |...||:
Mouse   933 EETVQDYEKGQLYGLEKFWAFLKYSKVKNQDIDPKLKEYLSKFKSIDDFRVEP-----PMAEEGM 992

  Fly   611 NWLRHCWSNGTDAI 624
            .  |...|:..|.:
Mouse   993 R--RKAHSSAGDEV 1004

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-8NP_001014717.1 SET 58..>88 CDD:394802 0/29 (0%)
SET_SMYD <224..313 CDD:380997 15/94 (16%)
Smyd1NP_001153599.1 SET_SMYD1 7..281 CDD:380924
zf-MYND 52..90 CDD:460312
Blue background indicates that the domain is not in the aligned region.

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