DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-8 and smyd1

DIOPT Version :9

Sequence 1:NP_001014717.1 Gene:SmydA-8 / 31200 FlyBaseID:FBgn0053548 Length:462 Species:Drosophila melanogaster
Sequence 2:XP_012811600.1 Gene:smyd1 / 100145429 XenbaseID:XB-GENE-978314 Length:491 Species:Xenopus tropicalis


Alignment Length:442 Identity:108/442 - (24%)
Similarity:177/442 - (40%) Gaps:85/442 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 NWTISSSTVAGRGVFATRDIAAGELIFQERA--LVTGPTARKGQLSSCICCHETLPQTGFLCR-- 116
            |..|..|...|||:.|.|:..||::||.|.|  .|...........||....|.|.:.| .|:  
 Frog     3 NVEIFESEGKGRGLRAIRESWAGDIIFAEPAYSAVVFDNLSHSVCHSCFKRQEKLLRCG-QCKFA 66

  Fly   117 HRCTLPVCETCSDSE--EHQAECEHFRRWQPKDVDAEQEQVNPMSLRILTAVRVFHLGKEQRHLV 179
            |.|.    .||....  .|:.||...:    |...|..|.:. ::.|||..:.....|..:..||
 Frog    67 HYCD----RTCQKESWANHKNECVAIK----KAGKAPNENIR-LAARILWRIEREGSGLTEGCLV 122

  Fly   180 --DAMQANAER---AYRREIIQAAQCFRNF-PTTDRVF-MDQLFRIVGVLNTNAFEAPCRSGGHE 237
              |.:|.:.::   |.:..:::..|.|..: |:..:.| |..:..|..|::.|.|....:. |.:
 Frog   123 SIDDLQNHIDKFDEAEKGLLMEDVQKFLEYWPSQSQQFGMQYISHIFSVISCNGFTLSDQR-GLQ 186

  Fly   238 TLLRGLFPLTAIMNHECTPNASHYFENGRLAVV------------RAARDIPKGGEITTTYTKIL 290
            .:..|:||...:.||:|.||.:..|.||....|            ||...|.||.|:|.:|...|
 Frog   187 AVGVGIFPNLCLANHDCWPNCTVIFNNGNHEAVRSMFHTQMRIELRALGKINKGEELTVSYVDFL 251

  Fly   291 WGNLT--RNIFLKMTKHFACDCVRCHDNTENGTYLSALFCREQGCRGLVIPVQTRTLQPDWRCIT 353
              |||  |...||...:|.|.|..|...|::               .|::.|:....:|:.|.: 
 Frog   252 --NLTEDRKAQLKKQYYFDCTCEHCTKKTKD---------------ALLLAVKDGEDKPEERVV- 298

  Fly   354 CENVFPHAKMAKYQDFALNTINNRINSCSVQDMIHFINELC--------PRFCPSSNYVL--IEA 408
             :.|..::|         :|: .:|.....:.:.:.:.:||        |.|..::.|:|  :..
 Frog   299 -KEVIQYSK---------DTM-EKIEKARSEGLYNDVVKLCRDCLKRQEPIFADTNIYMLRILSI 352

  Fly   409 KLNVIWRMTRFDHEEYTPEEMGHMDRYREEVLAILHKLGA--GECTLKKLIT 458
            ...|:..:..||......::|  :|.|    |.|.|:..|  |...::..:|
 Frog   353 YSEVLSYLQMFDDAAENAKKM--VDGY----LKIYHQNNAQLGMAVMRAGVT 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-8NP_001014717.1 SET <189..293 CDD:214614 32/117 (27%)
smyd1XP_012811600.1 zf-MYND 47..85 CDD:280009 11/42 (26%)
SET <189..252 CDD:214614 21/64 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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