DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mct1 and mct-3

DIOPT Version :9

Sequence 1:NP_001284810.1 Gene:Mct1 / 31198 FlyBaseID:FBgn0023549 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_510308.1 Gene:mct-3 / 181497 WormBaseID:WBGene00010834 Length:596 Species:Caenorhabditis elegans


Alignment Length:650 Identity:191/650 - (29%)
Similarity:304/650 - (46%) Gaps:133/650 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 SQQQHEACEMDMERQP--TPPDGGWGWVVVFGSFMIHIVTDGMTYSFG-IFYNEFLDYFNEGKGY 72
            :.|..|..|.::|...  .|||||:||.:|..||:::::.||:.::.| |....::..|...:..
 Worm    14 AHQDPETVEKELEDAGFIAPPDGGYGWAIVAASFLLNMIVDGVIFTVGKILQPAWVHSFGISEAS 78

  Fly    73 TAWIASIMVGVTFSSGPISSSFVNRYGCRAVTIAGSILAASCIIVSMFAQNVLTLIITIGFGTGL 137
            .|...||:.|..|.:|||:|...|.:|||.|.:|||::||...::|:.|.|:..|.::.|...|.
 Worm    79 AAMTMSILSGCYFFAGPIASVLCNVFGCRQVALAGSLIAALGFLLSISAPNIYVLYVSFGLIAGA 143

  Fly   138 GFGLIYLPAIVSVTQYFEAKRSLATGIAVCGSGFGTFVFAPLT----EFLIGNYGWRGAMLIIGG 198
            |||::||||||.::|||..|||:||||||||||.||.|||.|.    :|:.|:  |:..::....
 Worm   144 GFGMMYLPAIVIISQYFAKKRSVATGIAVCGSGIGTTVFALLNDVVWDFVGGD--WKQFLVYTAA 206

  Fly   199 IVLN----CIIFGAMFRPLE------------LEAPPQTPPNTPSTPKLAKKSAIIDQNT----- 242
            :.::    ||    :.|||:            ||...:.....|.:|.|:|      .||     
 Worm   207 VTISGLGACI----LLRPLKPSKDQIEKVAKVLEDYEEHKEKVPESPLLSK------HNTPFLSS 261

  Fly   243 ----TAAELEPLKVLPKDQYLQLPQRTDTAVSGGALCRSNSVGHNLKPNLNNNSNGAVNGQGPTL 303
                ||.:||                                            ||...|...::
 Worm   262 LELHTAGKLE--------------------------------------------NGHHTGSIKSI 282

  Fly   304 VTPPQAVVKSTS--NDDIARK----CHSQLQLTPLRDAHRERSASGTMYRPDAL-YQGSLH---- 357
            |   .||.|...  |..:.||    ..|...:.       .||.:|||.|.:|. :|.||.    
 Worm   283 V---DAVSKEIEDLNKPLLRKDIFYSGSTTNIA-------ARSRTGTMTREEAAEHQQSLRFRGK 337

  Fly   358 -NLPDYVSSRNDLSRSMSGSGVIKRYGSLRQSNNVSQSQEEAKCCGCITCSKETRDTFAEMMNFS 421
             ..|....|:.||:...:|...|.         |.|:.|             |.:....::::..
 Worm   338 VETPQQYLSKADLNAGDNGDVAIA---------NESKIQ-------------EIKQALKQLVDKE 380

  Fly   422 LLKDMVFVIFSVSNFCTSIGFNVPYLYVVAYAETLK-LTKTDASYLISTIGVANTVGRIILGYIS 485
            ||....|::.:.|...|...|.||::|:..:.:.:: ||..:.|:.:|.|||.|.|.||..|.::
 Worm   381 LLFSPSFLLLAFSGTLTLCCFYVPFIYLGNHLDKIEGLTTAEKSFTVSLIGVLNIVARIGCGILA 445

  Fly   486 DKPWVNRLLVYNVCLTACGVSTAMVPLCHDFQSLAFYCCVFGFTIGAYVGLTSVILVDLLGLDKL 550
            |:|.|:.|.|.|..|.|.|::|..|||...:.....:|..|...:..:..|.|:|:|:|:||:||
 Worm   446 DRPEVSALAVNNFALIAAGLATMTVPLYTAYWQFLAFCVPFSIGVACFAALRSIIVVELIGLEKL 510

  Fly   551 TNAFGLLLLFQGIASFIGPPIGGWMYDLTDSYAPAFLMAGLMIAISGLVMFAIPPLQRLQVRKSE 615
            :||||:||.|.|:.:.:|.|:...|.|.|.::..:|.:.|.::.|||.:...:..|::.::.:|:
 Worm   511 SNAFGILLTFMGVGAVVGSPLAAAMKDYTGNFDTSFYVMGALMTISGAMCIPLGGLRKRELARSD 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mct1NP_001284810.1 MFS 35..>213 CDD:119392 71/186 (38%)
MFS <426..604 CDD:119392 61/178 (34%)
mct-3NP_510308.1 MFS_MCT_SLC16 39..563 CDD:340910 180/611 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28635
OrthoDB 1 1.010 - - D352338at33208
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.830

Return to query results.
Submit another query.