DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pn and Prune1

DIOPT Version :10

Sequence 1:NP_476684.1 Gene:pn / 31194 FlyBaseID:FBgn0003116 Length:405 Species:Drosophila melanogaster
Sequence 2:NP_001007698.1 Gene:Prune1 / 310664 RGDID:1359521 Length:454 Species:Rattus norvegicus


Alignment Length:372 Identity:126/372 - (33%)
Similarity:190/372 - (51%) Gaps:55/372 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 RKLHLVMGNESCDLDSAVSAVTLAFVYAQRHREHD-YVPILNIPRRDYPLKTEVGHLFVKCGIAE 98
            |.||:|:|||:|||||.|||:.|||...:.....| ::|:|||.|.:.||:.:......:..|||
  Rat    16 RPLHVVLGNEACDLDSMVSALALAFYLTKTSEAEDIFIPVLNIKRSELPLRGDNVFFLQEVKIAE 80

  Fly    99 PVLLFRDDIPREVVQ---DVNVILVDHHVSP-----LAPNVTEILDHRPLEDSSPSFKQLPTLCQ 155
            ..|:|||:|....:.   .:.:||||||:.|     |...|.|:|||||:|.     |..|. |.
  Rat    81 SALIFRDEIDLLALHQAGQLTLILVDHHMLPKSDAALEEAVAEVLDHRPIEQ-----KYCPP-CH 139

  Fly   156 LDIDASVGSCATLVAQRYL---AEDQPRSTSVAQLLHATIVLDTINFAPAAKRYGPKDEAMVQKL 217
            :.::. |||||||||:|.|   .|...|.|  |.|||.||:||.:|......:...||...|:||
  Rat   140 VSVEL-VGSCATLVAERILQGAPETLDRQT--AALLHGTIILDCVNMDAKIGKATLKDNEYVEKL 201

  Fly   218 ESEL----NRKDAQRSSLFDELVAARADISKLTLTEVLRKDMKVLQTDRQVVPLAGMPILVRDFV 278
            |:..    .|||     :||.|..|:.|:|.||..::||||.|.:......|.::.:.:.:..|:
  Rat   202 EALFPDLPKRKD-----IFDSLQKAKFDVSGLTTEQMLRKDQKTIYRQGTKVAVSAVYMDLEAFL 261

  Fly   279 EKSGAEKAVREFGVES--NLLVILGMYVSPADGQVQRDLAL--------ISLSGQGQFVQRVQQA 333
            ::||....:..|..:.  :.||.:.::.:..:..| |.||:        :::.|          .
  Rat   262 QRSGLLSDLSAFCQDHSYDALVAMAIFFNTHNEPV-RQLAIFCPHEALRMTICG----------V 315

  Fly   334 LMESNDPKLELRP-HEVDTRFMGGCFLRQHNVQATRKHILPIVKRAL 379
            |.:|..|.|:|.| ..:.....  .:| |.|.|.:||.:||:::.||
  Rat   316 LEQSTSPALKLTPIPSISAHLQ--AYL-QGNTQVSRKKLLPVLQEAL 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnNP_476684.1 PPX1 38..>256 CDD:440840 95/233 (41%)
DHHA2 235..378 CDD:460719 37/153 (24%)
Prune1NP_001007698.1 PPX1 19..287 CDD:440840 103/281 (37%)
DHH motif. /evidence=ECO:0000250 106..108 1/1 (100%)
DHHA2 218..358 CDD:460719 37/153 (24%)
Essential for homodimerization. /evidence=ECO:0000250 394..421
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 398..421
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.