DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cyp4d1 and cyp26a1

DIOPT Version :9

Sequence 1:NP_476907.2 Gene:Cyp4d1 / 31188 FlyBaseID:FBgn0005670 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_571221.2 Gene:cyp26a1 / 30381 ZFINID:ZDB-GENE-990415-44 Length:492 Species:Danio rerio


Alignment Length:508 Identity:122/508 - (24%)
Similarity:199/508 - (39%) Gaps:103/508 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ILASALFVGLL-LYHLKFKRLIDLISYMPGPP---VLPLVG-----------------------H 45
            :|...||:..: |:.:...|.:|.....|.||   .||.:|                       :
Zfish    15 VLPVLLFLAAVKLWEMLMIRRVDPNCRSPLPPGTMGLPFIGETLQLILQRRKFLRMKRQKYGCIY 79

  Fly    46 GHHFIGKPPHEMVKKIFEFMETYSKDQVLKVWLGPELNVLMGNPKDVEVVLGTLRFNDKAGEYKA 110
            ..|..|.|.          :.....|.|.::.||....|.:..|..|..:||:...::..|..  
Zfish    80 KTHLFGNPT----------VRVMGADNVRQILLGEHKLVSVQWPASVRTILGSDTLSNVHGVQ-- 132

  Fly   111 LEPWLKEGLLVSRGRKWHK-RRKIITPAFHFKILDQFVEVFEKGSRDLLRNMEQDRLKHGDSGFS 174
                             || ::|.|..||....|:.::.|.::..:..::...|.     ||...
Zfish   133 -----------------HKNKKKAIMRAFSRDALEHYIPVIQQEVKSAIQEWLQK-----DSCVL 175

  Fly   175 LYDWINLCTMDTICETAMGVSINAQSNADSEYVQAVKTISMVLHKRMFNI--------LYRFDLT 231
            :|..:............:|.........:.|.|:|.:  .|:  |.:|::        |||    
Zfish   176 VYPEMKKLMFRIAMRILLGFEPEQIKTDEQELVEAFE--EMI--KNLFSLPIDVPFSGLYR---- 232

  Fly   232 YMLTPLARAEKKALNVLHQFTEKIIVQRREELIREGSSQESSNDDADVGAKRKMAFLDILLQSTV 296
                     ..:|.|.:|   .||     ||.||    ::..:||.:...|.|.|...::..|..
Zfish   233 ---------GLRARNFIH---SKI-----EENIR----KKIQDDDNENEQKYKDALQLLIENSRR 276

  Fly   297 DERPLSNLDIREEVDTFMFEGHDTTSSALMFFFYNIATHPEAQKKCFEEIRSVVGNDKSTP---V 358
            .:.|.|...::|.....:|.||:||:|........:..:.|..:|..||::..|.....||   :
Zfish   277 SDEPFSLQAMKEAATELLFGGHETTASTATSLVMFLGLNTEVVQKVREEVQEKVEMGMYTPGKGL 341

  Fly   359 SYELLNQLHYVDLCVKETLRMYPSVPLLGRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSE 423
            |.|||:||.|....:|||||:.|.||...|..|:..|:||..||.|.|:..|........::|..
Zfish   342 SMELLDQLKYTGCVIKETLRINPPVPGGFRVALKTFELNGYQIPKGWNVIYSICDTHDVADVFPN 406

  Fly   424 PNIFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRH 476
            .:.|:|||| :....|..:.:.||||..|.|.|:|::||.:.:|..:..:.:|
Zfish   407 KDEFQPERF-MSKGLEDGSRFNYIPFGGGSRMCVGKEFAKVLLKIFLVELTQH 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp4d1NP_476907.2 p450 35..507 CDD:278495 116/480 (24%)
cyp26a1NP_571221.2 p450 14..487 CDD:299894 122/508 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.