DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyp4d1 and Cyp26a1

DIOPT Version :9

Sequence 1:NP_476907.2 Gene:Cyp4d1 / 31188 FlyBaseID:FBgn0005670 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_569092.2 Gene:Cyp26a1 / 154985 RGDID:620161 Length:497 Species:Rattus norvegicus


Alignment Length:530 Identity:129/530 - (24%)
Similarity:205/530 - (38%) Gaps:100/530 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 AILASAL--FVGLLLYHLKFKRLIDL-----------ISYMPGPPVLPLVG-------------- 44
            |:|||||  ||..||..|...:|.||           :...||....|..|              
  Rat     5 ALLASALCTFVLPLLLFLAALKLWDLYCVSSRDRSCALPLPPGTMGFPFFGETLQMVLQRRKFLQ 69

  Fly    45 ---------HGHHFIGKPPHEMVKKIFEFMETYSKDQVLKVWLGPELNVLMGNPKDVEVVLGTLR 100
                     :..|..|:|.          :.....|.|.::.||....|.:..|..|..:||.  
  Rat    70 MKRRKYGFIYKTHLFGRPT----------VRVMGADNVRRILLGEHRLVSVHWPASVRTILGA-- 122

  Fly   101 FNDKAGEYKALEPWLKEGLLVSRGRKWHK-RRKIITPAFHFKILDQFVEVFEKGSRDLLRNMEQD 164
                             |.|.:.....|| |:|:|..||:.:.|..:|.|.   :.::...:|| 
  Rat   123 -----------------GCLSNLHDSSHKQRKKVIMQAFNREALQCYVPVI---AEEVSGCLEQ- 166

  Fly   165 RLKHGDSGFSLYDWINLCTMDTICETAMGVSINAQSNADSEYVQAVKTISMVLHKRMFNILYRFD 229
            .|..|:.|..:|..:............:|.........:.|. |.|:..     :.|...|:...
  Rat   167 WLSCGERGLLVYPEVKRLMFRIAMRILLGCEPGPAGGGEDEQ-QLVEAF-----EEMTRNLFSLP 225

  Fly   230 LTYMLTPLARAEKKALNVLHQFTEKIIVQRREELIREGSSQESSNDDADVGAKRKMAFLDILLQS 294
            :....:.|.|. .||.|::|        .|.||.|| ...:.....:.|.|.|..   |.:|::.
  Rat   226 IDVPFSGLYRG-VKARNLIH--------ARIEENIR-AKIRRLQAAEPDAGCKDA---LQLLIEH 277

  Fly   295 TVD--ERPLSNLDIREEVDTFMFEGHDTTSSALMFFFYNIATHPEAQKKCFEEIRS---VVGNDK 354
            :.:  || |....:::.....:|.||:||:||.......:..:|...:|..|||:|   :..:..
  Rat   278 SWERGER-LDMQALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREEIKSKGLLCKSHH 341

  Fly   355 STPVSYELLNQLHYVDLCVKETLRMYPSVPLLGRKVLEDCEINGKLIPAGTNIGISPLYLGRREE 419
            ...:..|.|.||.|:...:|||||:.|.||...|..|:..|:||..||.|.|:..|........:
  Rat   342 EDKLDMETLEQLKYIGCVIKETLRLNPPVPGGFRVALKTFELNGYQIPKGWNVIYSICDTHDVAD 406

  Fly   420 LFSEPNIFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHYEVDFVGD 484
            .|:....|.|:||..: ..|..:.:::|||..|.|:|:|::||.:.:|.....:.|..:...:..
  Rat   407 SFTNKEEFNPDRFTSL-HPEDTSRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARRCDWQLLNG 470

  Fly   485 ----SSEPPV 490
                .:.|||
  Rat   471 PPTMKTSPPV 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp4d1NP_476907.2 p450 35..507 CDD:278495 115/489 (24%)
Cyp26a1NP_569092.2 p450 43..491 CDD:299894 115/492 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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