DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgd and pgd

DIOPT Version :9

Sequence 1:NP_001259175.1 Gene:Pgd / 31185 FlyBaseID:FBgn0004654 Length:481 Species:Drosophila melanogaster
Sequence 2:XP_002939602.2 Gene:pgd / 100491794 XenbaseID:XB-GENE-993357 Length:482 Species:Xenopus tropicalis


Alignment Length:478 Identity:337/478 - (70%)
Similarity:397/478 - (83%) Gaps:2/478 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QADIALIGLAVMGQNLILNMDEKGFVVCAYNRTVAKVKEFLANEAKDTKVIGADSLEDMVSKLKS 68
            ||||||||||||||||:|||::.|||||||||||:||.:|||||||.||||||.|||:||||||.
 Frog     3 QADIALIGLAVMGQNLVLNMNDHGFVVCAYNRTVSKVDQFLANEAKGTKVIGAHSLEEMVSKLKK 67

  Fly    69 PRKVMLLVKAGSAVDDFIQQLVPLLSAGDVIIDGGNSEYQDTSRRCDELAKLGLLFVGSGVSGGE 133
            ||::|:|||||.||||||..|||.|..||:|||||||||:|::|||.||....:|||||||||||
 Frog    68 PRRIMMLVKAGQAVDDFINNLVPYLEPGDIIIDGGNSEYRDSTRRCRELKAKNILFVGSGVSGGE 132

  Fly   134 EGARHGPSLMPGGHEAAWPLIQPIFQAICAKADGEPCCEWVGDGGAGHFVKMVHNGIEYGDMQLI 198
            :|||:||||||||.:.|||.|:.|||:|.||.:.||||:|||:.|||||||||||||||||||||
 Frog   133 DGARYGPSLMPGGDKQAWPHIKDIFQSIAAKVENEPCCDWVGEEGAGHFVKMVHNGIEYGDMQLI 197

  Fly   199 CEAYHIMQS-LGLSADQMADEFGKWNSAELDSFLIEITRDILKYKDGKG-YLLERIRDTAGQKGT 261
            |||||:|:. ||:..|:||..|.:||..||||||||||.||||:||..| :|||:|:||||||||
 Frog   198 CEAYHLMKDILGIDQDEMAKAFEEWNKTELDSFLIEITADILKFKDTDGKHLLEKIQDTAGQKGT 262

  Fly   262 GKWTAIAALQYGVPVTLIGEAVFSRCLSALKDERVQASSVLKGPSTKAQVANLTKFLDDIKHALY 326
            ||||||:||.:||||||||||||:||||:||.||::||..||||.......:...||:||:.|||
 Frog   263 GKWTAISALDFGVPVTLIGEAVFARCLSSLKTERIEASKQLKGPKVNTFCGDKKAFLEDIRKALY 327

  Fly   327 CAKIVSYAQGFMLMREAARENKWRLNYGGIALMWRGGCIIRSVFLGNIKDAYTSQPELSNLLLDD 391
            .:||:||||||:|.|:||:|..|.|||||||:||||||||||||||.||:|:...|||.|||||:
 Frog   328 ASKIISYAQGFILFRQAAKEFGWNLNYGGIAMMWRGGCIIRSVFLGKIKEAFDRNPELQNLLLDN 392

  Fly   392 FFKKAIERGQDSWREVVANAFRWGIPVPALSTALSFYDGYRTAKLPANLLQAQRDYFGAHTYELL 456
            |||..:||.|:|||.||:...::|||:|..:||||||||||...|||||:|||||||||||||.|
 Frog   393 FFKSEMERCQESWRRVVSTGVQYGIPMPCFTTALSFYDGYRHEMLPANLIQAQRDYFGAHTYERL 457

  Fly   457 GQEGQFHHTNWTGTGGNVSASTY 479
            ...|.|.||||||.||:||:|:|
 Frog   458 SNPGNFIHTNWTGHGGSVSSSSY 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgdNP_001259175.1 NAD_binding_2 4..176 CDD:281445 127/171 (74%)
PRK09287 15..471 CDD:236453 320/457 (70%)
6PGD 180..467 CDD:278805 197/288 (68%)
pgdXP_002939602.2 PRK09287 14..469 CDD:236453 317/454 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H68268
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D189465at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11811
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

Return to query results.
Submit another query.