DRSC/TRiP Functional Genomics Resources

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Protein Alignment D2hgdh and F54D5.12

DIOPT Version :9

Sequence 1:NP_569982.1 Gene:D2hgdh / 31184 FlyBaseID:FBgn0023507 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_496465.1 Gene:F54D5.12 / 174764 WormBaseID:WBGene00010055 Length:487 Species:Caenorhabditis elegans


Alignment Length:517 Identity:215/517 - (41%)
Similarity:311/517 - (60%) Gaps:43/517 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 MRRPITTTTITTTSRTALAATYPAFATTVRTMAGSGAPIPELTEITDNVQRGNYATLTDKDVAHF 85
            :|||      |.:....|||.:..||..:::                             |:..|
 Worm     9 IRRP------TRSYAAVLAARHEGFAKVMQS-----------------------------DLMAF 38

  Fly    86 EQLLGKNFVLTEDLEGYNICFLKRIRGNSKLVLKPGSTAEVAAILKYCNERRLAVVPQGGNTGLV 150
            |..||::.|..:|:..:...:..:.:|...:||.|.||.||:|||.||::.:|||||||||||||
 Worm    39 ENFLGQDAVKKDDITNHTTDWTGQFKGPGSVVLYPKSTEEVSAILAYCSKNKLAVVPQGGNTGLV 103

  Fly   151 GGSVPICDEIVLSLARLNKVLSVDEVTGIAVVEAGCILENFDQRAREVGLTVPLDLGAKASCHIG 215
            |||:|:.||:|:|:.::||..|.|:..||...::|.|||:.|.:..::|..:|.|||||.||.||
 Worm   104 GGSIPVHDEVVISMNKINKQFSFDDTMGILKCDSGFILEDLDNKLAKLGYMMPFDLGAKGSCQIG 168

  Fly   216 GNVSTNAGGVRVVRYGNLHGSVLGVEAVLAT--GQVLDLMSNFKKDNTGYHMKHLFIGSEGTLGV 278
            ||::|.|||:|::|||:||..:||:..||..  |.||.|.|:.:||||..|..|||:||||.|||
 Worm   169 GNIATCAGGIRLIRYGSLHAHLLGLTVVLPDEHGTVLHLGSSIRKDNTTLHTPHLFLGSEGQLGV 233

  Fly   279 VTKLSMLCPHSSRAVNVAFIGLNSFDDVLKTFVSAKRNLGEILSSCELIDE---RALNTALEQFK 340
            :|.::|......::|..|.:|:.||....:....||.:|.|||||.||:|:   ..|.|.|....
 Worm   234 ITSVTMTAVPKPKSVQSAMLGIESFKKCCEVLKLAKSSLTEILSSFELLDDATMECLKTNLGLHP 298

  Fly   341 FLNSPISGFPFYMLIETSGSNGDHDEEKINQFIGDGMERGEIQDGTVTGDPGKVQEIWKIREMVP 405
            .||:|.   ||.:|:||||||.|||.||::.|:.:.:.:..|.||.:.|...:..::|::||..|
 Worm   299 VLNAPT---PFSILVETSGSNEDHDMEKMSAFLDECLSKNLIIDGVLAGSSAEATKMWQLRESAP 360

  Fly   406 LGLIEKSFCFKYDISLPLRDFYNIVDVMRERCGPLATVVCGYGHLGDSNLHLNVSCEEFNGEIYK 470
            |.:....:.:|:|:||||.::|.:.:||:||||.||..:..||||||.|.|||::.|:.|.|:.|
 Worm   361 LAVTRDGYVYKHDVSLPLENYYELTNVMKERCGSLAKRIVTYGHLGDGNTHLNITSEKHNEELEK 425

  Fly   471 RVEPFVYEYTSKLKGSISAEHGIGFLKKDYLHYSKDPVAIGYMREMKKLLDPNSILNPYKVL 532
            .:.||:||:.....||||||||||.||..|..:.|||......:::|.:.|||.||||||.:
 Worm   426 LLYPFLYEWVVDHGGSISAEHGIGQLKLPYSTFGKDPEERLLTKKLKNIFDPNGILNPYKTI 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
D2hgdhNP_569982.1 GlcD 85..532 CDD:223354 205/451 (45%)
FAD_binding_4 115..252 CDD:279851 74/138 (54%)
FAD-oxidase_C 291..531 CDD:280983 104/242 (43%)
F54D5.12NP_496465.1 GlcD 37..485 CDD:223354 203/450 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160183
Domainoid 1 1.000 206 1.000 Domainoid score I1703
eggNOG 1 0.900 - - E1_COG0277
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5534
Inparanoid 1 1.050 410 1.000 Inparanoid score I1052
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62883
OrthoDB 1 1.010 - - D216115at33208
OrthoFinder 1 1.000 - - FOG0003549
OrthoInspector 1 1.000 - - oto19864
orthoMCL 1 0.900 - - OOG6_100306
Panther 1 1.100 - - LDO PTHR43716
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1958
SonicParanoid 1 1.000 - - X2425
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.840

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