DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ph-p and SAMD1

DIOPT Version :9

Sequence 1:NP_476871.2 Gene:ph-p / 31181 FlyBaseID:FBgn0004861 Length:1589 Species:Drosophila melanogaster
Sequence 2:NP_612361.1 Gene:SAMD1 / 90378 HGNCID:17958 Length:538 Species:Homo sapiens


Alignment Length:494 Identity:102/494 - (20%)
Similarity:158/494 - (31%) Gaps:129/494 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1120 GGSIPATPTKETPSKGPTATLVPIGSPKTPVSGKDTCTTPKSSTPATVSASVEASSSTGEALSNG 1184
            |.:.||.|.....:....|...|..:|..|...........:..|...:|:..|..|.|.|    
Human   105 GATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPA---- 165

  Fly  1185 DASDRSSTPSKGATTPTSKQSNAAVQPPSS---TTPNSVSGKEEP-------------------- 1226
            ....|:...:..|..|.:..:..||.||:.   ..|.:|:.:|.|                    
Human   166 QPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQ 230

  Fly  1227 -------KLATCGSLTSATSTSTTTTITNGIGVA--RTTASTAVSTASTTTTSSGTFITSCTSTT 1282
                   .....|......|.........|.|.|  |.|.............:.|..     ..|
Human   231 PQPPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRL-----ERT 290

  Fly  1283 TTTTSSISNGSKD---LPKAMIKPNVLTHVIDGFIIQEANEPFPVTRQRYADKDVSDEPPKKKAT 1344
            .....::..|.:.   .|.|..:|:......:..::::..|          :.|..||       
Human   291 RLGALALPRGDRPGRAPPAASARPSRSKRGGEERVLEKEEE----------EDDDEDE------- 338

  Fly  1345 MQEDIKLSGIASAPGSDMVACEQ-------CGKMEHKAKLKRKRYCSPGCSRQAKNGIGGVGSGE 1402
             .|:..:|..:..|.||..|..|       .|....|.::|....|.|   .|.::    .|.|.
Human   339 -DEEDDVSEGSEVPESDRPAGAQHHQLNGERGPQSAKERVKEWTPCGP---HQGQD----EGRGP 395

  Fly  1403 TNGLGTGGIVGVDAMALVDRLDEAMAEEKMQTEATPKLSESFPILGASTEVPPMSLPVQAAISAP 1467
            ..|.||..:..:.||           .::..|              ||....|         .:|
Human   396 APGSGTRQVFSMAAM-----------NKEGGT--------------ASVATGP---------DSP 426

  Fly  1468 SPLAMPLGSPLSVALPTLAPLSVVTSGA--APKSSEVNGTDRP--PISSWSVDDVSNFIRELPGC 1528
            ||:.:|.|.|   |||          ||  .|........::|  |: .|:|.||..:..| .|.
Human   427 SPVPLPPGKP---ALP----------GADGTPFGCPPGRKEKPSDPV-EWTVMDVVEYFTE-AGF 476

  Fly  1529 QDYVDDFIQQEIDGQALLLLKEKHLVNAMGMKLGPALKI 1567
            .:....|.:|||||::|||::...::..:.::|||||||
Human   477 PEQATAFQEQEIDGKSLLLMQRTDVLTGLSIRLGPALKI 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ph-pNP_476871.2 SAM_Ph1,2,3 1508..1576 CDD:188976 24/62 (39%)
SAM 1511..1576 CDD:197735 22/57 (39%)
SAMD1NP_612361.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..30
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 92..247 26/145 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 282..458 47/252 (19%)
SAM_Atherin-like 459..527 CDD:188982 23/59 (39%)
SAM 459..525 CDD:197735 23/59 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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