DRSC/TRiP Functional Genomics Resources

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Protein Alignment ph-p and Phc3

DIOPT Version :9

Sequence 1:NP_476871.2 Gene:ph-p / 31181 FlyBaseID:FBgn0004861 Length:1589 Species:Drosophila melanogaster
Sequence 2:XP_006535530.1 Gene:Phc3 / 241915 MGIID:2181434 Length:1009 Species:Mus musculus


Alignment Length:1176 Identity:269/1176 - (22%)
Similarity:425/1176 - (36%) Gaps:333/1176 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   561 FGPNQIILRNQP-DGTQGMFIQQQPATQTLQTQQN------------------QIIQCNVTQTPT 606
            |..:...:.::| .||..........|.|:.|..:                  |:||..:.:.|:
Mouse     6 FKDHSTAMDSEPSSGTSVSTTASSTTTTTITTSSSRMQQPQISVYSGSDRHAVQVIQQALHRPPS 70

  Fly   607 KARTQLDALAPKQQQQQQQVGTTNQTQQQQLAVATAQLQQQ----QQQLTAAALQ---RPGAPVM 664
            .|          .|..||...    .|||.|.:.||.||||    .|..:.||:|   ..|.|  
Mouse    71 SA----------AQYLQQMYA----AQQQHLMLHTAALQQQHLSSSQLQSLAAVQASLSSGRP-- 119

  Fly   665 PHNGTQVRPASSVSTQTAQNQ-SLLK-----AKMRNKQQPVRPALATLKTEIGQVAGQNKVVGHL 723
                 ...|..||:.|::.:| |:|.     |::.|:.|       |..:..|.:..|..::|..
Mouse   120 -----STSPTGSVTQQSSMSQTSILSASPAPAQLMNRSQ-------TSSSTSGSITQQTMLLGST 172

  Fly   724 T---TVQQQQQATNLQQV-------VNAAGNKMVVMSTTGTPITLQNGQTLHAATAAGVDKQQQQ 778
            :   |..|.|.....|.:       |.|..:.:.|:|::.:|       :..:|.|         
Mouse   173 SPTLTASQAQMYLRAQMLIFTPATTVAAVQSDIPVVSSSPSP-------SCQSAAA--------- 221

  Fly   779 LQLFQKQQILQQQQMLQQQIAAIQMQQQQAAVQAQQQQQQQVSQQQQVNAQQQQAVAQQQQAVAQ 843
                              |:..:.::.|:..|.:..|.....|..|    .|...:...:..|..
Mouse   222 ------------------QVQNLTLRSQKLGVLSSSQNGSPKSAGQ----TQSLTICHNKTTVTS 264

  Fly   844 AQQQQREQQQQVAQAQAQHQQALANA---TQQILQ-VAPNQF--ITSHQQQQQQQL--------- 893
            ::..||:...:..:..:...::.:.|   |..|.| :||..:  |..|...:.||:         
Mouse   265 SKISQRDPSPESKKGGSPGLESRSTAVTRTSSIHQLIAPASYSPIQPHSLIKHQQIPLHSPPPKV 329

  Fly   894 -HNQLIQQQLQQQAQAQVQAQVQAQAQQQQQQREQQQNIIQQIVVQQSGATSQQTSQQQQHHQSG 957
             |:||:.||.|||.|     .:..|:..|.....|     ..|.:...|.:...::.|.||  ..
Mouse   330 SHHQLLLQQQQQQIQ-----PITLQSPSQDPPPSQ-----HCIPLPNHGLSPAPSNAQPQH--CS 382

  Fly   958 QLQLSSVPFSVSSSTTPAGIATSSALQAALSASGAIFQTAKPGTCSSSSPTSSVVTITNQSSTPL 1022
            .:|....|.:||.:             .|.||..::..:..|....|.|||..:.........||
Mouse   383 PVQSHPPPLTVSPN-------------QAQSAQQSVVVSPPPPHSPSQSPTIIIHPQALIQPHPL 434

  Fly  1023 VTSS--TVASIQQAQTQSAQVHQHQQLISATIAGGTQQQPQGPPSLTPTTNPILAMTSMMNATVG 1085
            |:|:  |..::|||...  ||....||              ..||..|                 
Mouse   435 VSSALQTGPNLQQAAAD--QVQSTAQL--------------NLPSHLP----------------- 466

  Fly  1086 HLSTAPPVTVSVTSTAVTSSPGQLVLLSTASSGGGGSIPATPTKETPSKGPTATLVPIGSPKTPV 1150
             |..:|.|.:.....:...||||.::              :||.........::.:||.:|    
Mouse   467 -LPASPVVHIGPVQQSALVSPGQQMV--------------SPTSHQQYSALQSSPIPIATP---- 512

  Fly  1151 SGKDTCTTPKSSTPATVSASVEASSSTGEALSNGD---------------ASDRSSTPSKGATTP 1200
              .....:|.:..|.....|:::.....|.||.|.               |......|.:....|
Mouse   513 --PQMSASPPAQLPPLPLQSMQSLQVQPEILSQGQVLVQNALVSEEELPAAEALVQLPFQTLPPP 575

  Fly  1201 TSKQSNAAVQPPSSTTP----------------------NSVSGKEEPKLA-TCGSL--TSATST 1240
            .:...|..||||:...|                      ..|..:|.|:.: .|..:  |....|
Mouse   576 QTVAVNLQVQPPAPVDPPVGMHLNQCHLHKVFSLKVYQVEDVCEEEMPEESDECARMDRTPPPPT 640

  Fly  1241 STTTTITNGIG-----------------VARTTASTAVSTASTTTTSSGT--FITSCTSTTTTTT 1286
            .:...:|.|.|                 ||..:||...|.:..|..|:..  .:....||.:::|
Mouse   641 LSPAAVTVGRGEDLTSEHPLLEQVELPAVASVSASVIKSPSDPTHASAPAPPLLIPAASTRSSST 705

  Fly  1287 SSISNGSKDL----PKAMIKPNVLTHVIDGFIIQEANEPFPVTRQRYADKDVSDEPPKKKATMQ- 1346
             |:::.:..|    |:|::||.:|||||:||:|||..|||||:|...    :.::|.||:..:. 
Mouse   706 -SLASSTPSLENKPPQAIVKPQILTHVIEGFVIQEGLEPFPVSRSSL----LIEQPVKKRPLLDN 765

  Fly  1347 ---------------------------EDIKLSGIASAPGSDMVACEQCGKMEHKAK-LKRKRYC 1383
                                       ||:..........|:::.||.||||.:..: |:.||:|
Mouse   766 QVVNSVCVQPELQNNTKHADNSSDTEIEDMMAEETLEEMDSELLKCEFCGKMGYPNEFLRSKRFC 830

  Fly  1384 SPGCSRQAKNGIGGVGSGETNGLGTGGIVGVDAMALVDRLDEAMAEEKMQTEATPKLSESFPILG 1448
            :..|:::.     .|...:...|....          .:.|......:.:..:.|:        |
Mouse   831 TMSCAKRY-----NVSCSKKFALSRWN----------RKPDNQSLGHRGRRPSGPE--------G 872

  Fly  1449 ASTEVPPMSLPVQ--------AAISAPSPLAMPLGSPLSVALPTLAPLSVVTSGAAPKSSEVNGT 1505
            |:.|.....||:.        |:...|.|.||...............|..|.....|::|::...
Mouse   873 AAREHILRQLPITYPSAEEDVASHEDPVPSAMTTRLRRQSERERERELRDVRIRKMPENSDLLPV 937

  Fly  1506 DRPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLLLKEKHLVNAMGMKLGPALKIVAK 1570
            .:...|.|:||||..||..||||||..|:|..|||||||||||||.||::||.|||||||||.|:
Mouse   938 AQTEPSIWTVDDVWAFIHSLPGCQDVADEFRAQEIDGQALLLLKEDHLMSAMNMKLGPALKICAR 1002

  Fly  1571 VESIKE 1576
            :.|:|:
Mouse  1003 INSLKD 1008

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ph-pNP_476871.2 SAM_Ph1,2,3 1508..1576 CDD:188976 44/67 (66%)
SAM 1511..1576 CDD:197735 44/64 (69%)
Phc3XP_006535530.1 Atrophin-1 224..>595 CDD:367360 91/453 (20%)
PAT1 <352..>516 CDD:370676 46/237 (19%)
SAM_Ph1,2,3 940..1008 CDD:188976 44/67 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848557
Domainoid 1 1.000 91 1.000 Domainoid score I7659
eggNOG 1 0.900 - - E1_28JS2
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S7881
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8777
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12247
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4720
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.780

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