DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ph-p and phc2a

DIOPT Version :9

Sequence 1:NP_476871.2 Gene:ph-p / 31181 FlyBaseID:FBgn0004861 Length:1589 Species:Drosophila melanogaster
Sequence 2:NP_694490.2 Gene:phc2a / 171465 ZFINID:ZDB-GENE-020312-1 Length:827 Species:Danio rerio


Alignment Length:1031 Identity:285/1031 - (27%)
Similarity:398/1031 - (38%) Gaps:303/1031 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   644 LQQQQQQLTAAALQRPGAPVMPHNGTQVRPASSVSTQTAQNQSLLKAKMRNKQQPVRPALATLKT 708
            ::::|:|.:.|:    .|.|...:.|.|  ::|.|..|..|.|       ::||.|         
Zfish     1 MEKEQEQGSVAS----SASVTIPSTTSV--STSTSAGTLSNSS-------SRQQTV--------- 43

  Fly   709 EIGQVAGQNKVVGHLT---TVQQQQQATNLQQVVNAAGNKMVVMSTTGTPITLQNGQTLHAATAA 770
                  .|..|.|.:|   |||..|||.|.|....||                |..|.::||   
Zfish    44 ------PQISVYGGITDRQTVQVIQQALNRQPSTVAA----------------QYLQQMYAA--- 83

  Fly   771 GVDKQQQQLQLFQKQQILQQQQMLQQQIAAIQMQQQQAAVQAQQQ--------QQQQVSQQQQVN 827
                |||.|.|  :...||||.:   .:||:    |||::.|.:|        .||.|:.|..:|
Zfish    84 ----QQQHLML--QTAALQQQHL---SLAAV----QQASIVAGRQSCSQHGSTSQQTVASQTTIN 135

  Fly   828 -------------AQQ---------QQAV-----------AQQQQAVAQAQQQQREQQQQVAQAQ 859
                         ||.         ||||           |.|.|...:||..|:....|||::.
Zfish   136 LATSPAAAHLISRAQSGSSVPVCIGQQAVLLGNSSTPTLTASQAQMYLRAQMAQQTNLVQVARSL 200

  Fly   860 AQHQQALANATQQILQVAPNQFITSHQQQQQQQLHNQLIQQQLQQQAQAQVQAQVQAQAQQQQQQ 924
            .   :|:..::|.|.  .|...:|:.|.:......|.|           ....|||..|.:.|| 
Zfish   201 G---RAVPLSSQLIF--TPTASVTAIQPEAPAPSINTL-----------PTSGQVQNLALRSQQ- 248

  Fly   925 REQQQNIIQQIVVQQSGATSQQTSQQQQHHQSGQLQLSSVPFSVSSSTTPAGIATSSALQAALSA 989
                            ||.:...||       .|||..||..||:|.|..:        .|.|..
Zfish   249 ----------------GALTSTLSQ-------SQLQSLSVKQSVASVTGQS--------VARLKG 282

  Fly   990 SGAIFQTAKPGTCSSSSP--TSSVVTITNQSSTPLVTS-----STVASIQQAQTQSAQVHQHQQL 1047
            .||  :.:..||.:.:||  |||..|..|..::.|.||     ::||......|...|:..||.|
Zfish   283 LGA--EPSPQGTAAKASPAETSSETTAKNDKTSDLTTSVCPSVTSVAGHPFISTAYTQIQTHQLL 345

  Fly  1048 ISATIAGGTQQQPQGPPSLTPTTNPIL--AMTSMMNATVGHLSTAPPVTVSVTSTAVTSSPGQLV 1110
            .........|||||           ||  ....::.|...|     |.||            |.|
Zfish   346 QQHKQQFVIQQQPQ-----------ILQRGQAQLLEAAAIH-----PHTV------------QAV 382

  Fly  1111 LLSTASSGGGGSIPATPTKETPSKGPTATLVPIGSPKTPVSGKDTCTTPKSSTPATVSASVEASS 1175
            .:.:|       :||.| ::.|        :|: .||.||    ||.........|||....|.:
Zfish   383 AIQSA-------LPAQP-QQCP--------IPL-LPKVPV----TCQQATIFHSTTVSQQALAQN 426

  Fly  1176 STGEALSNGDASDRSSTPSKGATTPTSKQSNAAVQ-PPSSTTPNSVSGKEEPKL-------ATCG 1232
            .....|:|..|.....|..|....|...|...|.| .|...||..:    ||:|       .|..
Zfish   427 GQAHILTNTKAPPLQLTAVKCQIHPVQIQQGVASQNVPDKDTPVLL----EPQLLSIPIQEPTRT 487

  Fly  1233 SLTSATSTSTTTTITNGIGVARTTASTAVSTASTTTTSSGTFITSCTSTTTTTTSSISNG-SKDL 1296
            .|..:...|.....|.|    .......|.:....|:.||      .:..|.|.|:..|| ||..
Zfish   488 ELRQSDKESQVKENTQG----SVNVKAGVGSPPAMTSGSG------NNAPTVTGSAPQNGESKPP 542

  Fly  1297 PKAMIKPNVLTHVIDGFIIQEANEPFPVTR-----------QRYADKDVSDEPPKKKATMQ-EDI 1349
            |:|::||.:|||||:||:|||..|||||.|           |.:|..|:.    |..|..: ||:
Zfish   543 PQAVVKPQILTHVIEGFVIQEGAEPFPVERPSLLIENLKQKQHHAYSDLQ----KHNADSEMEDL 603

  Fly  1350 KLSGIASAPGSDMVACEQCGKMEHKAKLKR-KRYCSPGCSRQAKNGIGGVGSGETNGLGTGGIVG 1413
            .|..:.:.| ..:..||.||.::.....|| ||:||..|:::.     .||..:..||..|    
Zfish   604 SLQELNNQP-EPVRTCEFCGNVDFAFNFKRSKRFCSTVCAKRY-----NVGCTKRMGLFPG---- 658

  Fly  1414 VDAMALVDRLDEAMAEEKMQTEAT--PKLSESFPILGASTEV----PPMSLPVQAAISAPSPLAM 1472
                             |...|.|  ||.|:..| ...|||.    |.:.....|::.:|.|...
Zfish   659 -----------------KSSPEDTKKPKASDESP-KNCSTETRKRNPSIQTTTGASLLSPHPSHP 705

  Fly  1473 PLG-----SPLSVALPTLAPLSVVTSGAAPKSSEV--NGTDRPPI----------SSWSVDDVSN 1520
            ..|     |.:|.....::|||..:.||..:..|.  :..:..|:          :.|:|:||..
Zfish   706 SHGESSQCSDMSSYEEPISPLSNSSFGAPIEHEESFDHSRELTPLLTQHFLASDPTKWNVEDVYE 770

  Fly  1521 FIRELPGCQDYVDDFIQQEIDGQALLLLKEKHLVNAMGMKLGPALKIVAKVESIKE 1576
            ||..||||.:..::|..||||||||:||||.||::.|.:||||||||.|::..:|:
Zfish   771 FICSLPGCHEIAEEFRSQEIDGQALMLLKEDHLMSTMNIKLGPALKIFARISMLKD 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ph-pNP_476871.2 SAM_Ph1,2,3 1508..1576 CDD:188976 36/77 (47%)
SAM 1511..1576 CDD:197735 35/64 (55%)
phc2aNP_694490.2 Disordered. /evidence=ECO:0000250|UniProtKB:Q9QWH1 1..78 30/120 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 282..316 11/35 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 482..545 17/72 (24%)
HD1 540..570 18/29 (62%)
PHC2_SAM_assoc 646..756 CDD:293222 29/131 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 653..730 23/98 (23%)
SAM_Ph1,2,3 758..826 CDD:188976 35/67 (52%)
SAM 760..827 CDD:197735 36/67 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594059
Domainoid 1 1.000 88 1.000 Domainoid score I7895
eggNOG 1 0.900 - - E1_28JS2
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 192 1.000 Inparanoid score I3848
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6612
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12247
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
98.850

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