DRSC/TRiP Functional Genomics Resources

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Protein Alignment ph-p and Samd11

DIOPT Version :9

Sequence 1:NP_476871.2 Gene:ph-p / 31181 FlyBaseID:FBgn0004861 Length:1589 Species:Drosophila melanogaster
Sequence 2:XP_038965039.1 Gene:Samd11 / 102549710 RGDID:1310271 Length:844 Species:Rattus norvegicus


Alignment Length:612 Identity:134/612 - (21%)
Similarity:186/612 - (30%) Gaps:236/612 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  1019 STPLVTS--------------STVASIQQAQTQSAQVHQHQQLISATIAGGTQQQPQ-----GPP 1064
            |.|.:||              .|:...:...|.:.:.|.| ||:||....|..::.|     |.|
  Rat   331 SCPYITSDCSSEKKARSKAPQETLLLPELESTMAPEDHYH-QLMSALSEAGPFEETQRLYHLGIP 394

  Fly  1065 S----------LTPT-TNPILAMTSMMNATVGHL----------STAPPVTVSVTSTAVTSSPGQ 1108
            |          .|.| ..|......:.::|.||.          .|.|..|.|.:...::..|  
  Rat   395 SHDLLRVRQEVATATLRGPSSLEVHLPSSTAGHRRKQGLVQHREGTVPAATTSFSERELSQPP-- 457

  Fly  1109 LVLLSTASSGGGGSIPATPTKETPSKGPTATLVPIGSP-KTPVSGKDT--CTTP-KSSTPATVSA 1169
                           |..|.:..|.       :.:||. :.|..|..|  |.|| .|..|   ||
  Rat   458 ---------------PLLPPQNAPH-------ITMGSHLRPPFFGMPTALCQTPGYSFLP---SA 497

  Fly  1170 SVEASSSTGEALSNGDASDRSSTPSKGATTPTSKQSNAAVQPPSSTTPNSVSGKEEPKLATCGSL 1234
            ..|..:...|.|                    .|||.|.::.........:.....|:|      
  Rat   498 QAEMLARQQELL--------------------RKQSLARLEMSELLRQKELGSVHRPQL------ 536

  Fly  1235 TSATSTSTTTTITNGIGVARTTASTAVSTASTTTTSSGTFITSCTSTTTTTTSSISNGSKDL--- 1296
               .:......|..|....:...|..|                           :.:||..|   
  Rat   537 ---LAPEVALHIPEGPDELQRRGSMLV---------------------------LKHGSAPLLAL 571

  Fly  1297 ---------PKAMIKPNVLTHVIDGFI---IQEANEPFPVTRQRYADKDVSDEPPKKKATMQEDI 1349
                     |....|.:..:....|.:   ..:.:||...||.....:|||:||.|     ..|.
  Rat   572 PPQGPPGPGPPIPAKESARSRSQKGSLGAASAQPSEPKETTRAGLWAQDVSEEPSK-----DSDG 631

  Fly  1350 KLSGIASAPGSDMVACEQCGKMEHKAKLKRKRYCSPGCSRQAKNGIGGVGSGETNGLGTGGIVGV 1414
            :...||:|.|                          |.|..::     |.:|.|...|.|     
  Rat   632 EDPEIAAARG--------------------------GASTPSQ-----VPAGGTRAEGKG----- 660

  Fly  1415 DAMALVDRLDEAMAEEKMQTEATPKLSESFPILGASTEVPPMSLPVQAAISAPSPLAMPLGSPLS 1479
                                           :|..||..||                :|||.|..
  Rat   661 -------------------------------LLSGSTLPPP----------------LPLGFPCG 678

  Fly  1480 VALPTLAPLSVVTSGAAPKSSEVNGTDRPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQA 1544
            ...|.   ....|.|......|..|.:  .|:.|:||||.||:..|.||.:|...|.:|.|||:.
  Rat   679 AVSPY---FHTGTMGGLFTDEETTGPE--DINKWTVDDVCNFVGGLSGCGEYARVFREQGIDGET 738

  Fly  1545 LLLLKEKHLVNAMGMKLGPALKIVAKV 1571
            |.||.|:||:|.||:||||||||.|:|
  Rat   739 LPLLTEEHLLNTMGLKLGPALKIRAQV 765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ph-pNP_476871.2 SAM_Ph1,2,3 1508..1576 CDD:188976 36/64 (56%)
SAM 1511..1576 CDD:197735 35/61 (57%)
Samd11XP_038965039.1 SAND 113..185 CDD:396076
SAM_Samd7,11 704..771 CDD:188978 36/62 (58%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12247
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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