DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16903 and SSN8

DIOPT Version :10

Sequence 1:NP_569980.1 Gene:CG16903 / 31178 FlyBaseID:FBgn0040394 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_014373.3 Gene:SSN8 / 855706 SGDID:S000004970 Length:323 Species:Saccharomyces cerevisiae


Alignment Length:220 Identity:62/220 - (28%)
Similarity:101/220 - (45%) Gaps:33/220 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 LENSLIPEGKIDVTPSSQDGLD---------------HETEKDLRILGCELIQTAGILLRLPQVA 135
            ||..|.|:|...|..|.|:|::               ::.:.:|||....||...|..|.:.|.|
Yeast    31 LECQLFPQGLNIVMDSKQNGIEQSITKNIPITHRDLHYDKDYNLRIYCYFLIMKLGRRLNIRQYA 95

  Fly   136 MATGQVLFQRFFYSKSFVRHNMETVAMSCVCLASKIEEAPRRIRDVINVFHHIKQVRAQKEISPM 200
            :||..:...||....|....|:..:..:||.||.|:||.|:.||.:::         ..:.:.|.
Yeast    96 LATAHIYLSRFLIKASVREINLYMLVTTCVYLACKVEECPQYIRTLVS---------EARTLWPE 151

  Fly   201 VLDPYYTNLKMQVIKAERRVLKELGFCVHVKHPHKLIVMYLQVL-----QYEKHEKLMQLSWNFM 260
            .:.|..|    :|.:.|..:|:||...:.|.||::.:...:|||     |.......:|..|:.:
Yeast   152 FIPPDPT----KVTEFEFYLLEELESYLIVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLI 212

  Fly   261 NDSLRTDVFMRYTPEAIACACIYLS 285
            |||...||.:.|.|..||.||::::
Yeast   213 NDSYINDVHLLYPPHIIAVACLFIT 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16903NP_569980.1 CYCLIN_CCNL1_rpt1 104..227 CDD:410292 34/137 (25%)
CYCLIN_CCNL_rpt2 232..323 CDD:410236 19/59 (32%)
SDP_N <440..>482 CDD:463517
SSN8NP_014373.3 CCL1 27..323 CDD:227640 62/220 (28%)
Blue background indicates that the domain is not in the aligned region.

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