DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16903 and CYCH;1

DIOPT Version :10

Sequence 1:NP_569980.1 Gene:CG16903 / 31178 FlyBaseID:FBgn0040394 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001330469.1 Gene:CYCH;1 / 832824 AraportID:AT5G27620 Length:368 Species:Arabidopsis thaliana


Alignment Length:245 Identity:50/245 - (20%)
Similarity:93/245 - (37%) Gaps:52/245 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 YPRLFNRIVLTLENSLIPEGKIDVT-----PSSQDGLDHETEKDLRILGCE-----------LIQ 123
            |.....|.|..||.....:.::|.:     |..:.|...:.:|.|:.|..:           .:|
plant    24 YKAANQRAVQMLEKCGTTQVEVDASGSLTYPKDKVGSGDQADKKLKPLSADEERFMRAFYEAKVQ 88

  Fly   124 TAGILLRLPQVAMATGQVLFQRFFYSKSFVRHNMETVAMSCVCLASKIEE---APRRIRDVINVF 185
            ........|....||....|:||:...|.::|:.:.:.::||..|.||||   :...|...||..
plant    89 EVCSAFAFPHKIQATALQYFKRFYLQWSVMQHHPKEIMLTCVYAACKIEENHVSAEEIGKGINQD 153

  Fly   186 HHIKQVRAQKEISPMVLDPYYTNLKMQVIKAERRVLKELGFCVHVKHPHKLIVMYLQVL------ 244
            |.|                        ::|.|..||:.|.|.:.|..|::.|..::..:      
plant   154 HRI------------------------ILKYEMAVLQSLEFDLIVYAPYRAIEGFVNNMEEFLQA 194

  Fly   245 ---QYEKHEKLMQLSWNFMNDSLRTDVFMRYTPEAIACACIYLSARKLNI 291
               :.:|.|.|::.:....:..:.||..:.:.|..:|.|.:.::...|.:
plant   195 RDDEIQKLESLLKGATAEADKVMLTDAPLLFPPGQLALASLRIANGVLGV 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16903NP_569980.1 CYCLIN_CCNL1_rpt1 104..227 CDD:410292 30/136 (22%)
CYCLIN_CCNL_rpt2 232..323 CDD:410236 11/69 (16%)
SDP_N <440..>482 CDD:463517
CYCH;1NP_001330469.1 CYCLIN_AcCycH_rpt1 3..172 CDD:410288 38/171 (22%)
CYCLIN_AcCycH_rpt2 175..302 CDD:410289 11/70 (16%)
Blue background indicates that the domain is not in the aligned region.

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