DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16903 and ccnl1a

DIOPT Version :9

Sequence 1:NP_569980.1 Gene:CG16903 / 31178 FlyBaseID:FBgn0040394 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001082832.1 Gene:ccnl1a / 553269 ZFINID:ZDB-GENE-050419-206 Length:534 Species:Danio rerio


Alignment Length:572 Identity:254/572 - (44%)
Similarity:324/572 - (56%) Gaps:113/572 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 VNISNNNSSSGAAPGADAAGGDAGGVAAAQADANKPIYPRLFNRIVLTLENSLIPEGKIDVTPSS 102
            |||        |.|.|:....::.|:.         |..::::.:.||::||||||.|:..|||.
Zfish     6 VNI--------AGPAANTPANNSEGIL---------IGDKVYSEVFLTIDNSLIPEEKLSPTPSM 53

  Fly   103 QDGLDHETEKDLRILGCELIQTAGILLRLPQVAMATGQVLFQRFFYSKSFVRHNMETVAMSCVCL 167
            |||||..||.|||||||||||:|||||||||||||||||||.|||||||||:|:.|.|||:||.|
Zfish    54 QDGLDLYTETDLRILGCELIQSAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACVNL 118

  Fly   168 ASKIEEAPRRIRDVINVFHHIKQVRAQKEISPMVLDPYYTNLKMQVIKAERRVLKELGFCVHVKH 232
            ||||||||||||||||||||::|:|.::..||::||..|.|.|.||||||||:||||||||||||
Zfish   119 ASKIEEAPRRIRDVINVFHHLRQLRGKRSPSPLILDQNYINTKNQVIKAERRILKELGFCVHVKH 183

  Fly   233 PHKLIVMYLQVLQYEKHEKLMQLSWNFMNDSLRTDVFMRYTPEAIACACIYLSARKLNIPLPNSP 297
            |||:||||||||:.||::.|:|.:||:|||||||:||:|:..|.||||||||:||.|.|.||:.|
Zfish   184 PHKIIVMYLQVLECEKNQTLVQTAWNYMNDSLRTNVFVRFQAETIACACIYLAARVLQISLPSRP 248

  Fly   298 PWFGIFRVPMADITDICYRVMELYMRSKPVVEKLEAAVDELKKRYIDARNKTKEANT--PPAVIT 360
            .|:.:|.....:|.|||...::||.|.||..:.||..||:.|....||:.|.|..|.  .||:. 
Zfish   249 IWYLLFGATEEEIKDICTTTLKLYTRRKPNYDLLEKEVDKRKMAIQDAKLKAKGLNPDGTPAIC- 312

  Fly   361 VDRNNGSHNAWGGFIQRAIPLPLPS--------EKSPQ--------------------------- 390
                     ::|||    .|...||        ||||.                           
Zfish   313 ---------SFGGF----SPASKPSSPNIMKTDEKSPNLQTLKAMKKEPEDRPQGSKSPHNGLRK 364

  Fly   391 -----KDSRSRSRSRTRTHSRTPRSRSPRSRSPSRERTKKTHRSRSSRSRSRSPPKHKKKSRHYS 450
                 ::|||.||||:||.||| ||||||....:|.....|:   ||||||||..:.....||.:
Zfish   365 DSKLGRNSRSASRSRSRTRSRT-RSRSPRRHYNNRRSHSGTY---SSRSRSRSHSRSLSPRRHTN 425

  Fly   451 RSPTRSNSPHSK--------HRKSKSSRERSEYYSKKDRSGNPGSSNNLGDGDKYRN-SVSNSGK 506
            ..|.....||.|        |:.|:.|.:|....|:...:..|...:...|.::.|: |.|:..|
Zfish   426 HGPPSPLLPHLKSKQRSDDLHQHSRHSHKRKRSRSRSRSTSKPRERDRERDRERERDRSSSDLAK 490

  Fly   507 HSRYSSSSSRRNSGGGGDGRSGGGGGGGGGGNGNHGSRGGHKHRDGDRSRDR 558
            ..::..||                      |:|:|..|     |:..||.:|
Zfish   491 KHKHERSS----------------------GSGHHRDR-----RERSRSYER 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16903NP_569980.1 CYCLIN 114..203 CDD:238003 70/88 (80%)
CYCLIN 235..321 CDD:214641 47/85 (55%)
ccnl1aNP_001082832.1 CYCLIN 65..137 CDD:238003 63/71 (89%)
CYCLIN 188..264 CDD:214641 43/75 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 190 1.000 Domainoid score I3202
eggNOG 1 0.900 - - E1_COG5333
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 410 1.000 Inparanoid score I1846
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002258
OrthoInspector 1 1.000 - - otm24426
orthoMCL 1 0.900 - - OOG6_102010
Panther 1 1.100 - - LDO PTHR10026
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1832
SonicParanoid 1 1.000 - - X1491
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.850

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